Different outputs depending on the file

[cfsancas]

I did a test with some Salmonella enterica genomes. When I open with Gingr the files parsnp.tree, parsnp.grr and parsnp.xmfa, the trees shown are different. Could anyone tell me what this difference in results is due to?

[advaitb]

Hi @cfsancas, could you share some output files that we could go over. Parsnp was recently updated to include the new midpoint reroot method in dendropy. It would help us debug if needed. Thanks!

[cfsancas]

Hi, @advaitb, thanks you for your answer. I attach you the output files. Just the .grr, .tree and .xmfa.

P_2019_11_11_092950535099.zip