build: moved module to src to ease tox/pytest/coverage setup

Author: martibosch

MANIFEST.in

@@ -1 +1 @@
-include pylandstats/adjacency.pyx
+include src/pylandstats/adjacency.pyx

pyproject.toml

@@ -71,12 +71,6 @@ exclude_lines = [
 ignore_errors = true
 omit = ["tests/*", "docs/conf.py"]
 
-[tool.coverage.run]
-source = ["pylandstats"]
-
-[tool.pytest.ini_options]
-addopts = ["--import-mode=importlib"]
-
 [tool.ruff]
 line-length = 88
 
@@ -91,11 +85,11 @@ known-first-party = ["pylandstats"]
 
 [tool.ruff.lint.per-file-ignores]
 "**/__init__.py" = ["F403"]
-"pylandstats/landscape.py" = ["D401"] # for metric docstrings
+"src/pylandstats/landscape.py" = ["D401"] # for metric docstrings
 "tests/test_pylandstats.py" = ["D"]
 
 [tool.ruff.lint.pydocstyle]
 convention = "numpy"
 
 [tool.setuptools.packages.find]
-include = ["pylandstats", "pylandstats.*"]
+where = ["src"]

setup.py

@@ -7,7 +7,7 @@
 extensions = [
     Extension(
         name="pylandstats.adjacency",
-        sources=["pylandstats/adjacency.pyx"],
+        sources=["src/pylandstats/adjacency.pyx"],
         include_dirs=[np.get_include()],
     )
 ]

pylandstats/__init__.py src/pylandstats/__init__.py

@@ -32,4 +32,4 @@ allowlist_externals =
 extras =
     test
 commands =
-    pytest -s --cov=pylandstats --cov-append --cov-report=xml --cov-report term-missing tests {posargs}
+    pytest -s --cov=pylandstats tests {posargs}