refactor: dependency installation for Quarto computing features (#14)

Author: mcanouil

.github/.devcontainer/devcontainer.json

@@ -10,38 +10,15 @@
 	},
 	"remoteUser": "vscode",
 	"features": {
-		"ghcr.io/devcontainers/features/common-utils:2": {
-			"installZsh": "true",
-			"username": "vscode",
-			"userUid": "1000",
-			"userGid": "1000",
-			"upgradePackages": "true"
-		},
-		"ghcr.io/devcontainers/features/git:1": {
-			"version": "latest",
-			"ppa": "false"
-		},
-		"ghcr.io/rocker-org/devcontainer-features/r-rig:1": {
-			"version": "release",
-			"vscodeRSupport": "none",
-			"installDevTools": "false",
-			"installREnv": "true",
-			"installRMarkdown": "false"
-		},
-		"ghcr.io/devcontainers/features/python:1": {
-			"version": "latest",
-			"enableShared": "true"
-		},
-		"ghcr.io/julialang/devcontainer-features/julia:1": {
-			"channel": "release"
-		},
 		"./quarto-computing-dependencies": {
-			"dependencies": "all"
-		},
-		"ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": {
-			"version": "prerelease",
-			"installTinyTex": "true",
-			"installChromium": "false"
-		}
+			"rDeps": "rmarkdown,httpgd",
+			"pythonDeps": "jupyter,papermill",
+			"juliaDeps": "IJulia"
+		}//,
+		// "ghcr.io/rocker-org/devcontainer-features/quarto-cli:1": {
+		// 	"version": "prerelease",
+		// 	"installTinyTex": "true",
+		// 	"installChromium": "false"
+		// }
 	}
 }

.github/.devcontainer/quarto-computing-dependencies/devcontainer-feature.json

@@ -4,21 +4,52 @@
   "name": "Install Computing Dependencies for Quarto",
   "description": "Install R, Python, and Julia dependencies for Quarto.",
   "options": {
-    "dependencies": {
+    "rDeps": {
       "type": "string",
-      "enum": ["all", "r", "python", "julia"],
-      "default": "all",
-      "description": "Specify what dependencies to install."
-    }
+      "default": "rmarkdown",
+      "description": "Specify what R dependencies to install."
+    },
+		"pythonDeps": {
+			"type": "string",
+			"default": "jupyter,papermill",
+			"description": "Specify what Python dependencies to install."
+		},
+		"juliaDeps": {
+			"type": "string",
+			"default": "IJulia",
+			"description": "Specify what Julia dependencies to install."
+		}
   },
   "dependsOn": {
-    "ghcr.io/devcontainers/features/common-utils": {},
-    "ghcr.io/rocker-org/devcontainer-features/r-rig": {},
-    "ghcr.io/devcontainers/features/python": {},
-    "ghcr.io/julialang/devcontainer-features/julia": {}
+    "ghcr.io/devcontainers/features/common-utils:2": {
+			"installZsh": "true",
+			"username": "vscode",
+			"userUid": "1000",
+			"userGid": "1000",
+			"upgradePackages": "true"
+		},
+		"ghcr.io/devcontainers/features/git:1": {
+			"version": "latest",
+			"ppa": "false"
+		},
+		"ghcr.io/rocker-org/devcontainer-features/r-rig:1": {
+			"version": "release",
+			"vscodeRSupport": "none",
+			"installDevTools": "false",
+			"installREnv": "true",
+			"installRMarkdown": "false"
+		},
+		"ghcr.io/devcontainers/features/python:1": {
+			"version": "latest",
+			"enableShared": "true"
+		},
+		"ghcr.io/julialang/devcontainer-features/julia:1": {
+			"channel": "release"
+		}
   },
   "installsAfter": [
 		"ghcr.io/devcontainers/features/common-utils",
+		"ghcr.io/devcontainers/features/git",
     "ghcr.io/rocker-org/devcontainer-features/r-rig",
     "ghcr.io/devcontainers/features/python",
     "ghcr.io/julialang/devcontainer-features/julia"

.github/.devcontainer/quarto-computing-dependencies/install.sh

@@ -4,10 +4,12 @@ set -e
 
 export DEBIAN_FRONTEND=noninteractive
 
-DEPENDENCIES=${DEPENDENCIES:-"all"}
-
 USERNAME=${USERNAME:-${_REMOTE_USER:-"automatic"}}
 
+R_DEPS=${RDEPS:-"rmarkdown"}
+PYTHON_DEPS=${PYTHONDEPS:-"jupyter,papermill"}
+JULIA_DEPS=${JULIADEPS:-"IJulia"}
+
 set -e
 
 if [ "$(id -u)" -ne 0 ]; then
@@ -33,30 +35,23 @@ elif [ "${USERNAME}" = "none" ] || ! id -u "${USERNAME}" >/dev/null 2>&1; then
 fi
 
 quarto_r_deps() {
-  su "${USERNAME}" -c "Rscript -e 'pak::pkg_install(\"rmarkdown\")'"
+  local deps=$1
+  deps=$(echo "${deps}" | sed 's/,/","/g')
+  su "${USERNAME}" -c "Rscript -e 'pak::pkg_install(c(\"${deps}\"))'"
 }
 
 quarto_python_deps() {
-  su "${USERNAME}" -c "python3 -m pip install jupyter papermill"
+  local deps=$1
+  deps=$(echo "${deps}" | sed 's/,/ /g')
+  python3 -m pip install ${deps}
 }
 
 quarto_julia_deps() {
-  su "${USERNAME}" -c "~/.juliaup/bin/julia -e 'using Pkg; Pkg.add(\"IJulia\")'"
+  local deps=$1
+  deps=$(echo "${deps}" | sed 's/,/","/g')
+  su "${USERNAME}" -c "~/.juliaup/bin/julia -e 'using Pkg; Pkg.add.([\"${deps}\"])'"
 }
 
-case ${DEPENDENCIES} in
-  all)
-    quarto_r_deps
-    quarto_python_deps
-    quarto_julia_deps
-    ;;
-  r)
-    quarto_r_deps
-    ;;
-  python)
-    quarto_python_deps
-    ;;
-  julia)
-    quarto_julia_deps
-    ;;
-esac
+quarto_r_deps ${R_DEPS}
+quarto_python_deps ${PYTHON_DEPS}
+quarto_julia_deps ${JULIA_DEPS}