Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Memory error on Ubuntu Xenial #3

Open
sebbelese opened this issue Mar 23, 2018 · 1 comment
Open

Memory error on Ubuntu Xenial #3

sebbelese opened this issue Mar 23, 2018 · 1 comment

Comments

@sebbelese
Copy link

sebbelese commented Mar 23, 2018 •
edited
Loading

I built sedflux on Ubuntu Xenial, but cannot start any run due to a pointer error.

make test produces the following output

Running tests...
Test project /home/sblaise/Develop/sedflux/build
      Start  1: Help
 1/12 Test  #1: Help .............................   Passed    0.00 sec
      Start  2: SedCell
 2/12 Test  #2: SedCell ..........................   Passed    0.01 sec
      Start  3: SedColumn
 3/12 Test  #3: SedColumn ........................***Exception: Other  0.11 sec
      Start  4: SedCube
*** Error in `/home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube': munmap_chunk(): invalid pointer: 0x0000000000a83290 ***
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f555fa617e5]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x1a8)[0x7f555fa6dae8]
/home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube(eh_dlm_read_full+0x1fe)[0x45b62d]
/home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube(eh_dlm_read_full_swap+0xa5)[0x45b712]
/home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube(sed_get_floor_sequence_2+0xb6)[0x430f0c]
/home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube(test_sequence_2+0x13f)[0x417481]
/lib/x86_64-linux-gnu/libglib-2.0.so.0(+0x6f7db)[0x7f55606c37db]
/lib/x86_64-linux-gnu/libglib-2.0.so.0(+0x6f9a3)[0x7f55606c39a3]
/lib/x86_64-linux-gnu/libglib-2.0.so.0(+0x6f9a3)[0x7f55606c39a3]
/lib/x86_64-linux-gnu/libglib-2.0.so.0(g_test_run_suite+0xbe)[0x7f55606c3bae]
/lib/x86_64-linux-gnu/libglib-2.0.so.0(g_test_run+0x11)[0x7f55606c3bd1]
/home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube(main+0x1c5)[0x41c827]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f555fa0a830]
/home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube(_start+0x29)[0x416e29]
======= Memory map: ========
00400000-0049a000 r-xp 00000000 08:07 49711120                           /home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube
00699000-0069a000 r--p 00099000 08:07 49711120                           /home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube
0069a000-0069d000 rw-p 0009a000 08:07 49711120                           /home/sblaise/Develop/sedflux/build/ew/sed/sed-test-cube
0069d000-00791000 rw-p 00000000 00:00 0 
00a6b000-00ab1000 rw-p 00000000 00:00 0                                  [heap]
7f555f55d000-7f555f575000 r-xp 00000000 08:07 22413802                   /lib/x86_64-linux-gnu/libpthread-2.23.so
7f555f575000-7f555f774000 ---p 00018000 08:07 22413802                   /lib/x86_64-linux-gnu/libpthread-2.23.so
7f555f774000-7f555f775000 r--p 00017000 08:07 22413802                   /lib/x86_64-linux-gnu/libpthread-2.23.so
7f555f775000-7f555f776000 rw-p 00018000 08:07 22413802                   /lib/x86_64-linux-gnu/libpthread-2.23.so
7f555f776000-7f555f77a000 rw-p 00000000 00:00 0 
7f555f77a000-7f555f7e8000 r-xp 00000000 08:07 22413617                   /lib/x86_64-linux-gnu/libpcre.so.3.13.2
7f555f7e8000-7f555f9e8000 ---p 0006e000 08:07 22413617                   /lib/x86_64-linux-gnu/libpcre.so.3.13.2
7f555f9e8000-7f555f9e9000 r--p 0006e000 08:07 22413617                   /lib/x86_64-linux-gnu/libpcre.so.3.13.2
7f555f9e9000-7f555f9ea000 rw-p 0006f000 08:07 22413617                   /lib/x86_64-linux-gnu/libpcre.so.3.13.2
7f555f9ea000-7f555fba9000 r-xp 00000000 08:07 22413620                   /lib/x86_64-linux-gnu/libc-2.23.so
7f555fba9000-7f555fda9000 ---p 001bf000 08:07 22413620                   /lib/x86_64-linux-gnu/libc-2.23.so
7f555fda9000-7f555fdad000 r--p 001bf000 08:07 22413620                   /lib/x86_64-linux-gnu/libc-2.23.so
7f555fdad000-7f555fdaf000 rw-p 001c3000 08:07 22413620                   /lib/x86_64-linux-gnu/libc-2.23.so
7f555fdaf000-7f555fdb3000 rw-p 00000000 00:00 0 
7f555fdb3000-7f555fdc9000 r-xp 00000000 08:07 22413705                   /lib/x86_64-linux-gnu/libgcc_s.so.1
7f555fdc9000-7f555ffc8000 ---p 00016000 08:07 22413705                   /lib/x86_64-linux-gnu/libgcc_s.so.1
7f555ffc8000-7f555ffc9000 rw-p 00015000 08:07 22413705                   /lib/x86_64-linux-gnu/libgcc_s.so.1
7f555ffc9000-7f55600d1000 r-xp 00000000 08:07 22413594                   /lib/x86_64-linux-gnu/libm-2.23.so
7f55600d1000-7f55602d0000 ---p 00108000 08:07 22413594                   /lib/x86_64-linux-gnu/libm-2.23.so
7f55602d0000-7f55602d1000 r--p 00107000 08:07 22413594                   /lib/x86_64-linux-gnu/libm-2.23.so
7f55602d1000-7f55602d2000 rw-p 00108000 08:07 22413594                   /lib/x86_64-linux-gnu/libm-2.23.so
7f55602d2000-7f5560444000 r-xp 00000000 08:07 22807087                   /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7f5560444000-7f5560644000 ---p 00172000 08:07 22807087                   /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7f5560644000-7f556064e000 r--p 00172000 08:07 22807087                   /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7f556064e000-7f5560650000 rw-p 0017c000 08:07 22807087                   /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7f5560650000-7f5560654000 rw-p 00000000 00:00 0 
7f5560654000-7f5560763000 r-xp 00000000 08:07 22413514                   /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2
7f5560763000-7f5560962000 ---p 0010f000 08:07 22413514                   /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2
7f5560962000-7f5560963000 r--p 0010e000 08:07 22413514                   /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2
7f5560963000-7f5560964000 rw-p 0010f000 08:07 22413514                   /lib/x86_64-linux-gnu/libglib-2.0.so.0.4800.2
7f5560964000-7f5560965000 rw-p 00000000 00:00 0 
7f5560965000-7f556098b000 r-xp 00000000 08:07 22413623                   /lib/x86_64-linux-gnu/ld-2.23.so
7f5560b5f000-7f5560b66000 rw-p 00000000 00:00 0 
7f5560b80000-7f5560b81000 rw-p 00000000 00:00 0 
7f5560b81000-7f5560b88000 r--s 00000000 08:07 23069779                   /usr/lib/x86_64-linux-gnu/gconv/gconv-modules.cache
7f5560b88000-7f5560b8a000 rw-p 00000000 00:00 0 
7f5560b8a000-7f5560b8b000 r--p 00025000 08:07 22413623                   /lib/x86_64-linux-gnu/ld-2.23.so
7f5560b8b000-7f5560b8c000 rw-p 00026000 08:07 22413623                   /lib/x86_64-linux-gnu/ld-2.23.so
7f5560b8c000-7f5560b8d000 rw-p 00000000 00:00 0 
7ffd57e92000-7ffd57eb3000 rw-p 00000000 00:00 0                          [stack]
7ffd57fdd000-7ffd57fdf000 r--p 00000000 00:00 0                          [vvar]
7ffd57fdf000-7ffd57fe1000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
 4/12 Test  #4: SedCube ..........................***Exception: Other  0.11 sec
      Start  5: SedHydro
 5/12 Test  #5: SedHydro .........................***Exception: Other  0.11 sec
      Start  6: SedRiver
 6/12 Test  #6: SedRiver .........................   Passed    0.00 sec
      Start  7: SedWave
 7/12 Test  #7: SedWave ..........................   Passed    0.00 sec
      Start  8: UtilsGrid
 8/12 Test  #8: UtilsGrid ........................   Passed    0.02 sec
      Start  9: UtilsIO
 9/12 Test  #9: UtilsIO ..........................   Passed    0.00 sec
      Start 10: UtilsKeyFile
10/12 Test #10: UtilsKeyFile .....................   Passed    0.00 sec
      Start 11: UtilsNum
11/12 Test #11: UtilsNum .........................   Passed    0.04 sec
      Start 12: UtilsSymbolTable
12/12 Test #12: UtilsSymbolTable .................   Passed    0.00 sec

75% tests passed, 3 tests failed out of 12

Total Test time (real) =   3.43 sec

The following tests FAILED:
	  3 - SedColumn (OTHER_FAULT)
	  4 - SedCube (OTHER_FAULT)
	  5 - SedHydro (OTHER_FAULT)
Errors while running CTest
Makefile:149 : la recette pour la cible « test » a échouée
make: *** [test] Erreur 8

It may be linked with the other issue (#2).
@sebbelese sebbelese changed the title Memory error on Ubuntu Xenial Memory error on Ubuntu Mar 23, 2018
@sebbelese sebbelese changed the title Memory error on Ubuntu Memory error on Ubuntu Xenial Mar 23, 2018
@sebbelese
Copy link
Author

I tried on 2 different laptops. I also tried compiling in 32bits, with no more success.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@sebbelese