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[FEATURE] Add option to reconstruct only single FOV #500

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ieivanov opened this issue Feb 4, 2025 · 2 comments
Closed

[FEATURE] Add option to reconstruct only single FOV #500

ieivanov opened this issue Feb 4, 2025 · 2 comments

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@ieivanov
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ieivanov commented Feb 4, 2025

Datasets may contain may FOVs. When testing reconstructions parameters, it may be useful to reconstruct only one FOV. It would be nice to add an option for that.

@talonchandler
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Thanks for testing @ieivanov.

I just tested this store:
/hpc/projects/comp.micro/zebrafish/20240126_3dpf_she_h2b_cldnb_mcherry/0-zarr/20240126_3dpf_she_h2b_cldnb_mcherry/fish1_60x_1_multipos_1.zarr

and I found that appending /0/0/0 to the "Input Store" field reconstructs a single FOV (same behaviour as the CLI).

Is this what you had in mind? Or are you thinking of a more user-friendly interface with dropdown menus, similar to napari-iohub's viewer.

@ieivanov
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ieivanov commented Feb 5, 2025

Yup, that's it, thank you! That was easy :)

@ieivanov ieivanov closed this as completed Feb 5, 2025
amitabhverma added a commit that referenced this issue Feb 7, 2025
- streamline different setup needs to address #498
- added position metadata to info label #500
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