Make it compatible with assembly graphs coming from other assembly software

[amanzanom]

Whenever trying to run GraphBin with an assembly graph coming from Canu, I keep getting the error when reading the reads " ERROR - Unexpected 'tig00XXXXX-XX-XXXXX' ". [....] Please make sure you have provided the correct assembler type and the correct path [....]

I imagine there is no inherent problem in reading graphs from other assemblers, especially if coverage information is calculated separately. So, could you implement something in this line to be able to read other assembly graphs? I can provide you with an assembly graph I am using as an example.

I believe this can help widen the compatible assembly pipelines to use this software (which i think works really nicely).

Cheers

[Vini2]

Hello @amanzanom,

Thanks for raising this issue.

GraphBin already supports assemblies from Flye, Canu and Miniasm (https://graphbin.readthedocs.io/en/latest/usage/). Can you please clarify if this error was popping up from GraphBin or GraphBin2? (GraphBin2 does not support Canu assemblies yet).

Thanks,
Vijini