test: update snapshot assertion

Author: maxibor

modules/nf-core/ribodetector/tests/main.nf.test

@@ -30,9 +30,7 @@ nextflow_process {
                 { assert process.out.fastq },
                 { assert process.out.log },
                 { assert path(process.out.log[0][1]).getText().contains("Writing output non-rRNA sequences") },
-                { assert snapshot(  
-                    path(process.out.versions[0]).yaml  
-                ).match() } 
+                { assert snapshot(process.out.versions).match("versions") }
             )
         }
 
@@ -60,9 +58,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(  
-                    path(process.out.versions[0]).yaml  
-                ).match() }  
+                { assert snapshot(process.out).match() }
             )
         }
 

modules/nf-core/ribodetector/tests/main.nf.test.snap

@@ -1,28 +1,73 @@
 {
-    "ribodetector - rnaseq PE input": {
+    "versions": {
         "content": [
-            {
-                "RIBODETECTOR": null,
-                "ribodetector": "0.3.1"
-            }
+            [
+                "versions.yml:md5,f98df8f0eaa704e4db74785adc9cc791"
+            ]
         ],
         "meta": {
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-10-24T10:37:41.570969"
+        "timestamp": "2025-10-27T10:12:20.183608"
     },
     "ribodetector - stub rnaseq PE input": {
         "content": [
             {
-                "RIBODETECTOR": null,
-                "ribodetector": "0.3.1"
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        [
+                            "test.nonrna.1.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940",
+                            "test.nonrna.2.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
+                        ]
+                    ]
+                ],
+                "1": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.log:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "2": [
+                    "versions.yml:md5,f98df8f0eaa704e4db74785adc9cc791"
+                ],
+                "fastq": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        [
+                            "test.nonrna.1.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940",
+                            "test.nonrna.2.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
+                        ]
+                    ]
+                ],
+                "log": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.log:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,f98df8f0eaa704e4db74785adc9cc791"
+                ]
             }
         ],
         "meta": {
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-10-24T10:38:17.647722"
+        "timestamp": "2025-10-27T10:12:59.627863"
     }
 }