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new module: SegmentationBenchmark #7848

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4 tasks done
BioinfoTongLI opened this issue Mar 19, 2025 · 1 comment
Open
4 tasks done

new module: SegmentationBenchmark #7848

BioinfoTongLI opened this issue Mar 19, 2025 · 1 comment
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new module Adding a new module

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@BioinfoTongLI
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BioinfoTongLI commented Mar 19, 2025 •
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Is there an existing module for this?

  • I have searched for the existing module

Is there an open PR for this?

  • I have searched for existing PRs

Is there an open issue for this?

  • I have searched for existing issues

Further Information

This module will take two label images as input (one ground truth and another for comparison).
In the end, this module will return a tabular data for a range of metrics reflecting the goodness of segmentation.
We are currentlly planning on merging metrics from BIAFLOWS and MONAI

The code will be generated during the nf-core hackathon 2025 in March

Are you going to work on this?

  • If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module
@BioinfoTongLI BioinfoTongLI added the new module Adding a new module label Mar 19, 2025
@BioinfoTongLI
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@cakirb @StasMakarchuk @YinshuiChang

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Hackathon March 2025
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@BioinfoTongLI