From c5de9f35f49dbec1e55dc4c1dbef479282ddb56b Mon Sep 17 00:00:00 2001
From: Niklas Schandry <niklas@bio.lmu.de>
Date: Wed, 27 Aug 2025 10:56:17 +0200
Subject: [PATCH] Fix thread limit

Types are hard..
---
 modules/nf-core/links/main.nf | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/modules/nf-core/links/main.nf b/modules/nf-core/links/main.nf
index c55bc661e270..3e3ee19cdcb4 100644
--- a/modules/nf-core/links/main.nf
+++ b/modules/nf-core/links/main.nf
@@ -30,7 +30,8 @@ process LINKS {
     script:
     def prefix = task.ext.prefix ?: "${meta.id}"
     // Currently LINKS does not support more than 4 threads
-    def nthreads = "${task.cpus}" < 4 ? "${task.cpus}" : 4
+    def ncpu = "${task.cpus}".toInteger()
+    def nthreads = ncpu < 4 ? ncpu : 4
     def args = task.ext.args ?: ""
     """
     if [[ ${assembly} == *.gz ]];