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2 files changed +6
-6
lines changed Original file line number Diff line number Diff line change @@ -215,7 +215,7 @@ def get_parser():
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'(default: OUTPUT_DIR/freesurfer)' ,
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)
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g_fs .add_argument (
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- " --fs-reuse-base" ,
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+ ' --fs-reuse-base' ,
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action = 'store_true' ,
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dest = 'fs_reuse_base' ,
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help = 'Reuse freesurfer base template'
Original file line number Diff line number Diff line change @@ -248,21 +248,21 @@ def init_surface_recon_wf(
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if not fs_reuse_base :
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- recon_config = pe .Node (FSDetectInputs (hires_enabled = hires ), name = " recon_config" )
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+ recon_config = pe .Node (FSDetectInputs (hires_enabled = hires ), name = ' recon_config' )
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- fov_check = pe .Node (niu .Function (function = _check_cw256 ), name = " fov_check" )
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+ fov_check = pe .Node (niu .Function (function = _check_cw256 ), name = ' fov_check' )
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fov_check .inputs .default_flags = ['-noskullstrip' , '-noT2pial' , '-noFLAIRpial' ]
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autorecon1 = pe .Node (
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- ReconAll (directive = " autorecon1" , openmp = omp_nthreads ),
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- name = " autorecon1" ,
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+ ReconAll (directive = ' autorecon1' , openmp = omp_nthreads ),
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+ name = ' autorecon1' ,
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n_procs = omp_nthreads ,
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mem_gb = 5 ,
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)
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autorecon1 .interface ._can_resume = False
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autorecon1 .interface ._always_run = True
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- skull_strip_extern = pe .Node (FSInjectBrainExtracted (), name = " skull_strip_extern" )
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+ skull_strip_extern = pe .Node (FSInjectBrainExtracted (), name = ' skull_strip_extern' )
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autorecon_resume_wf = init_autorecon_resume_wf (omp_nthreads = omp_nthreads )
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