mambo R function bayesian variable error

[kpitz]

The mambo function (https://github.com/nvpatin/MAMBO/blob/main/mambo/R/mambo.R) now throws an error due to at line 98, calling 'if(bayesian) {'. We can either incorporate the variable bayesian =1 as default or remove that if statement.

[EricArcher]

I've just added the 'bayesian' argument to mambo() along with a few code fixes to make it work properly. I haven't edited the downstream functions to so that they gracefully handle mambo() results that don't have bayesian results.
Test the new function and let me know if needs any fixes.

[kpitz]

Thanks @EricArcher, that worked! I can run mambo() now without any errors, and use the functions switchSummary, outlierLoadings, and plotPCs to interrogate the output. All within the docker container.

[EricArcher]

👍🏾

…

On Wed, Mar 27, 2024 at 5:01 PM Katie Pitz ***@***.***> wrote: Thanks @EricArcher <https://github.com/EricArcher>, that worked! I can run mambo() now without any errors, and use the functions switchSummary, outlierLoadings, and plotPCs to interrogate the output. All within the docker container. — Reply to this email directly, view it on GitHub <#1 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABFBGSYHQ6YM7AWTTOEYGWTY2NMWNAVCNFSM6AAAAABFLZF5K2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAMRUGE3TGNJZGM> . You are receiving this because you were mentioned.Message ID: ***@***.***>

-- *Eric Archer, Ph.D. *(he/him/his <https://www.glsen.org/activity/pronouns-guide-glsen>) Leader, Marine Mammal Genetics Program <https://www.fisheries.noaa.gov/west-coast/science-data/marine-mammal-genetics-research> Southwest Fisheries Science Center (NMFS/NOAA) 8901 La Jolla Shores Drive La Jolla, CA 92037 USA 619-837-3170 Adjunct Professor, Marine Biology <http://profiles.ucsd.edu/frederick.archer> Scripps Institution of Oceanography University of California, San Diego GitHub: github.com/ericarcher ORCID: https://orcid.org/0000-0002-3179-4769

---- " *The universe doesn't care what you believe. The wonderful thing about science is that it doesn't ask for your faith, it just asks for your eyes.*" - Randall Munroe "*Lighthouses are more helpful than churches.*" - Benjamin Franklin "*...but I'll take a GPS over either one.*" - John C. "Craig" George