Accessing gene expression data via the package

[kate-simonova]

Hi,

is it possible to access RNAseq data (a table of gene expression values) via the package?

So far I came only to this:

cb.getMolecularProfile("laml_tcga_rna_seq_v2_mrna")

However it just returns:

{'datatype': 'CONTINUOUS', 'description': 'mRNA gene expression (RNA Seq V2 RSEM)', 'genericAssayType': None, 'molecularAlterationType': 'MRNA_EXPRESSION', 'molecularProfileId': 'laml_tcga_rna_seq_v2_mrna', 'name': 'mRNA expression (RNA Seq V2 RSEM)', 'patientLevel': False, 'pivotThreshold': None, 'showProfileInAnalysisTab': False, 'sortOrder': None, 'study': CancerStudy(allSampleCount=None, cancerType=None, cancerTypeId='aml', citation=None, cnaSampleCount=None, completeSampleCount=None, description='TCGA Acute Myeloid Leukemia. Source data from <A HREF="http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LAML/20160128/">GDAC Firehose</A>. Previously known as TCGA Provisional.', groups='PUBLIC', importDate='2023-06-19 09:43:19', massSpectrometrySampleCount=None, methylationHm27SampleCount=None, miRnaSampleCount=None, mrnaMicroarraySampleCount=None, mrnaRnaSeqSampleCount=None, mrnaRnaSeqV2SampleCount=None, name='Acute Myeloid Leukemia (TCGA, Firehose Legacy)', pmid=None, publicStudy=True, readPermission=True, referenceGenome='hg19', rppaSampleCount=None, sequencedSampleCount=None, status=0, studyId='laml_tcga', treatmentCount=None), 'studyId': 'laml_tcga'}

Thanks for the response,

K.