File tree
276 files changed
+344
-344
lines changed- target
- docker
- cluster/leiden
- compression/tar_extract
- convert
- from_10xh5_to_h5mu
- from_10xmtx_to_h5mu
- from_bd_to_10x_molecular_barcode_tags
- from_bdrhap_to_h5mu
- from_cellranger_multi_to_h5mu
- from_h5ad_to_h5mu
- from_h5mu_to_h5ad
- velocyto_to_h5mu
- correction/cellbender_remove_background
- dataflow
- concat
- merge
- split_modalities
- demux
- bcl2fastq
- bcl_convert
- cellranger_mkfastq
- dimred
- pca
- umap
- download
- download_file
- sync_test_resources
- files/make_params
- filter
- do_filter
- filter_with_counts
- filter_with_hvg
- filter_with_scrublet
- remove_modality
- subset_h5mu
- integrate
- harmonypy
- scanorama
- scarches
- scvi
- interactive
- run_cellxgene
- run_cirrocumulus
- mapping
- bd_rhapsody
- cellranger_count_split
- cellranger_count
- cellranger_multi
- htseq_count_to_h5mu
- htseq_count
- multi_star_to_h5mu
- multi_star
- samtools_sort
- star_align_v273a
- star_align
- star_build_reference
- metadata
- add_id
- join_csv
- join_uns_to_obs
- neighbors
- bbknn
- find_neighbors
- process_10xh5/filter_10xh5
- qc
- calculate_qc_metrics
- fastqc
- multiqc
- reference
- build_bdrhap_reference
- build_cellranger_reference
- make_reference
- report/mermaid
- transfer/publish
- transform
- clr
- delete_layer
- log1p
- normalize_total
- regress_out
- scale
- velocity
- scvelo
- velocyto
- native
- compression/tar_extract
- dataflow
- concat
- merge
- split_modalities
- download/sync_test_resources
- integrate/scarches
- metadata/add_id
- transform/scale
- velocity
- scvelo
- velocyto
- nextflow
- cluster/leiden
- convert
- from_10xh5_to_h5mu
- from_10xmtx_to_h5mu
- from_bd_to_10x_molecular_barcode_tags
- from_bdrhap_to_h5mu
- from_cellranger_multi_to_h5mu
- from_h5ad_to_h5mu
- from_h5mu_to_h5ad
- velocyto_to_h5mu
- correction/cellbender_remove_background
- dataflow
- concat
- merge
- split_modalities
- demux
- bcl2fastq
- bcl_convert
- cellranger_mkfastq
- dimred
- pca
- umap
- download
- download_file
- sync_test_resources
- files/make_params
- filter
- do_filter
- filter_with_counts
- filter_with_hvg
- filter_with_scrublet
- remove_modality
- subset_h5mu
- integrate
- harmonypy
- scanorama
- scarches
- scvi
- mapping
- bd_rhapsody
- cellranger_count_split
- cellranger_count
- cellranger_multi
- htseq_count_to_h5mu
- htseq_count
- multi_star_to_h5mu
- multi_star
- samtools_sort
- star_align_v273a
- star_align
- star_build_reference
- metadata
- add_id
- join_csv
- join_uns_to_obs
- neighbors
- bbknn
- find_neighbors
- process_10xh5/filter_10xh5
- qc
- calculate_qc_metrics
- fastqc
- multiqc
- reference
- build_bdrhap_reference
- build_cellranger_reference
- make_reference
- report/mermaid
- transfer/publish
- transform
- clr
- delete_layer
- log1p
- normalize_total
- regress_out
- scale
- velocity
- scvelo
- velocyto
Some content is hidden
Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.
276 files changed
+344
-344
lines changedOriginal file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
183 | 183 |
| |
184 | 184 |
| |
185 | 185 |
| |
186 |
| - | |
| 186 | + | |
187 | 187 |
|
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
433 | 433 |
| |
434 | 434 |
| |
435 | 435 |
| |
436 |
| - | |
| 436 | + | |
437 | 437 |
| |
438 |
| - | |
| 438 | + | |
439 | 439 |
| |
440 | 440 |
| |
441 | 441 |
| |
|
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
106 | 106 |
| |
107 | 107 |
| |
108 | 108 |
| |
109 |
| - | |
| 109 | + | |
110 | 110 |
|
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
403 | 403 |
| |
404 | 404 |
| |
405 | 405 |
| |
406 |
| - | |
| 406 | + | |
407 | 407 |
| |
408 |
| - | |
| 408 | + | |
409 | 409 |
| |
410 | 410 |
| |
411 | 411 |
| |
|
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
232 | 232 |
| |
233 | 233 |
| |
234 | 234 |
| |
235 |
| - | |
| 235 | + | |
236 | 236 |
|
Lines changed: 2 additions & 2 deletions
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
419 | 419 |
| |
420 | 420 |
| |
421 | 421 |
| |
422 |
| - | |
| 422 | + | |
423 | 423 |
| |
424 |
| - | |
| 424 | + | |
425 | 425 |
| |
426 | 426 |
| |
427 | 427 |
| |
|
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
118 | 118 |
| |
119 | 119 |
| |
120 | 120 |
| |
121 |
| - | |
| 121 | + | |
122 | 122 |
|
Lines changed: 2 additions & 2 deletions
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
397 | 397 |
| |
398 | 398 |
| |
399 | 399 |
| |
400 |
| - | |
| 400 | + | |
401 | 401 |
| |
402 |
| - | |
| 402 | + | |
403 | 403 |
| |
404 | 404 |
| |
405 | 405 |
| |
|
Lines changed: 1 addition & 1 deletion
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
124 | 124 |
| |
125 | 125 |
| |
126 | 126 |
| |
127 |
| - | |
| 127 | + | |
128 | 128 |
|
Lines changed: 2 additions & 2 deletions
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
407 | 407 |
| |
408 | 408 |
| |
409 | 409 |
| |
410 |
| - | |
| 410 | + | |
411 | 411 |
| |
412 |
| - | |
| 412 | + | |
413 | 413 |
| |
414 | 414 |
| |
415 | 415 |
| |
|
0 commit comments