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‎CHANGELOG.md‎

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* `qc/calculate_qc_metrics`: allow setting the output column names and disabling the calculation of several metrics (PR #644).
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* `cluster/leiden`: Allow calculating multiple resolutions in parallel (PR #645).
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* `rna_multisample` workflow: added `--modality` argument (PR #607).
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* `multisample` workflow: in addition to using multimodal files as input, this workflow now also accepts a list of files. The list of files must be the unimodal equivalents of a split multimodal file. The modalities in the list must be unique and after processing the modalities will be merged into multimodal files (PR #606).

‎target/docker/annotate/popv/.config.vsh.yaml‎

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output: "/home/runner/work/openpipeline/openpipeline/target/docker/annotate/popv"
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executable: "/home/runner/work/openpipeline/openpipeline/target/docker/annotate/popv/popv"
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viash_version: "0.8.4"
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git_commit: "1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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git_commit: "537fb9951382171123d7e0d95f044af75c7fbf33"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "0.12.1-6-g1bd9b1d081"
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git_tag: "0.12.1-7-g537fb99513"

‎target/docker/annotate/popv/popv‎

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@@ -503,9 +503,9 @@ RUN cd /opt && git clone --depth 1 https://github.com/YosefLab/PopV.git && \
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LABEL org.opencontainers.image.authors="Matthias Beyens, Robrecht Cannoodt"
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LABEL org.opencontainers.image.description="Companion container for running component annotate popv"
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LABEL org.opencontainers.image.created="2024-02-19T13:20:25Z"
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LABEL org.opencontainers.image.created="2024-02-19T13:26:59Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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LABEL org.opencontainers.image.revision="537fb9951382171123d7e0d95f044af75c7fbf33"
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LABEL org.opencontainers.image.version="1.0.0rc1"
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VIASHDOCKER

‎target/docker/cluster/leiden/.config.vsh.yaml‎

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output: "/home/runner/work/openpipeline/openpipeline/target/docker/cluster/leiden"
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executable: "/home/runner/work/openpipeline/openpipeline/target/docker/cluster/leiden/leiden"
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viash_version: "0.8.4"
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git_commit: "1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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git_commit: "537fb9951382171123d7e0d95f044af75c7fbf33"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "0.12.1-6-g1bd9b1d081"
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git_tag: "0.12.1-7-g537fb99513"

‎target/docker/cluster/leiden/leiden‎

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LABEL org.opencontainers.image.authors="Dries De Maeyer"
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LABEL org.opencontainers.image.description="Companion container for running component cluster leiden"
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LABEL org.opencontainers.image.created="2024-02-19T13:20:27Z"
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LABEL org.opencontainers.image.created="2024-02-19T13:27:01Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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LABEL org.opencontainers.image.revision="537fb9951382171123d7e0d95f044af75c7fbf33"
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LABEL org.opencontainers.image.version="1.0.0rc1"
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VIASHDOCKER

‎target/docker/compression/compress_h5mu/.config.vsh.yaml‎

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output: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/compress_h5mu"
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executable: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/compress_h5mu/compress_h5mu"
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viash_version: "0.8.4"
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git_commit: "1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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git_commit: "537fb9951382171123d7e0d95f044af75c7fbf33"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "0.12.1-6-g1bd9b1d081"
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git_tag: "0.12.1-7-g537fb99513"

‎target/docker/compression/compress_h5mu/compress_h5mu‎

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LABEL org.opencontainers.image.authors="Dries Schaumont"
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LABEL org.opencontainers.image.description="Companion container for running component compression compress_h5mu"
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LABEL org.opencontainers.image.created="2024-02-19T13:20:20Z"
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LABEL org.opencontainers.image.created="2024-02-19T13:26:54Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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LABEL org.opencontainers.image.revision="537fb9951382171123d7e0d95f044af75c7fbf33"
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LABEL org.opencontainers.image.version="1.0.0rc1"
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VIASHDOCKER

‎target/docker/compression/tar_extract/.config.vsh.yaml‎

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output: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/tar_extract"
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executable: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/tar_extract/tar_extract"
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viash_version: "0.8.4"
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git_commit: "1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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git_commit: "537fb9951382171123d7e0d95f044af75c7fbf33"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "0.12.1-6-g1bd9b1d081"
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git_tag: "0.12.1-7-g537fb99513"

‎target/docker/compression/tar_extract/tar_extract‎

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RUN :
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LABEL org.opencontainers.image.description="Companion container for running component compression tar_extract"
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LABEL org.opencontainers.image.created="2024-02-19T13:20:20Z"
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LABEL org.opencontainers.image.created="2024-02-19T13:26:54Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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LABEL org.opencontainers.image.revision="537fb9951382171123d7e0d95f044af75c7fbf33"
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LABEL org.opencontainers.image.version="1.0.0rc1"
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VIASHDOCKER

‎target/docker/convert/from_10xh5_to_h5mu/.config.vsh.yaml‎

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output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_10xh5_to_h5mu"
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executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu"
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viash_version: "0.8.4"
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git_commit: "1bd9b1d0811a5e16c69833abeac7d646f3b28748"
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git_commit: "537fb9951382171123d7e0d95f044af75c7fbf33"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "0.12.1-6-g1bd9b1d081"
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git_tag: "0.12.1-7-g537fb99513"

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