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src/methods/suzuki_mlp/config.vsh.yaml

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__merge__: ../../api/comp_method.yaml
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name: suzuki_mlp
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label: Suzuki MLP
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summary: Shuji Suzuki's winning neural network solution for multimodal single-cell integration.
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summary: Hierarchical encoder-decoder neural network with task-specific preprocessing and residual connections for cross-modal prediction.
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description: |
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A hierarchical neural network encoder-decoder model based on Shuji Suzuki's 1st place solution
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in the Open Problems Multimodal Single-Cell Integration competition. The model uses task-specific
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preprocessing, SVD dimensionality reduction, and hierarchical MLP blocks with residual connections
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for learning cross-modal mappings.
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references:
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doi: 10.1038/s41592-022-01652-z
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The original author's code was adapted by GitHub Copilot
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(using Claude Sonnet) to integrate with this repository's framework and standards.
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links:
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documentation: https://www.kaggle.com/competitions/open-problems-multimodal/discussion/348468
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repository: https://github.com/shu65/open-problems-multimodal
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info:
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documentation_url: https://github.com/shu65/open-problems-multimodal
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repository_url: https://github.com/shu65/open-problems-multimodal
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preferred_normalization: log_cp10k
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arguments:
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# Task configuration
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- path: utils.py
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engines:
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- type: docker
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image: openproblems/base_pytorch_nvidia:1.0.0
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image: openproblems/base_pytorch_nvidia:1
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runners:
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- type: executable
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- type: nextflow

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