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lines changed Original file line number Diff line number Diff line change @@ -48,7 +48,7 @@ viash run src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml -- \
4848 --output_sp " $OUTPUT_DIR /simulated_dataset_processed.h5ad"
4949
5050# run a metric
51- viash run src/metrics/ks_statistic_spatial /config.vsh.yaml -- \
51+ viash run src/metrics/ks_statistic_gene_cell /config.vsh.yaml -- \
5252 --input_spatial_dataset " $OUTPUT_DIR /dataset_sp.h5ad" \
5353 --input_singlecell_dataset " $OUTPUT_DIR /dataset_sc.h5ad" \
5454 --input_simulated_dataset " $OUTPUT_DIR /simulated_dataset_processed.h5ad" \
Original file line number Diff line number Diff line change @@ -62,7 +62,6 @@ dependencies:
6262 - name : metrics/downstream
6363 - name : metrics/ks_statistic_gene_cell
6464 - name : metrics/ks_statistic_sc_features
65- - name : metrics/ks_statistic_spatial
6665 - name : process_datasets/generate_sim_spatialcluster
6766runners :
6867 - type : nextflow
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