Skip to content

Commit 8ad079f

Browse files
committed
update summary section
1 parent 64393c2 commit 8ad079f

File tree

1 file changed

+8
-8
lines changed

1 file changed

+8
-8
lines changed

src/metrics/downstream/config.vsh.yaml

+8-8
Original file line numberDiff line numberDiff line change
@@ -5,7 +5,7 @@ name: downstream
55
info:
66
metrics:
77
- name: clustering_ari
8-
label: ARI
8+
label: clustering_ari
99
summary: Adjusted rand index (ARI) measures the similarity between two clusters in real and simulated datasets.
1010
description: |
1111
Adjusted Rand Index used in spatial clustering to measure the similarity between two data clusterings, adjusted for chance.
@@ -18,7 +18,7 @@ info:
1818
max: +Inf
1919
maximize: true
2020
- name: clustering_nmi
21-
label: NMI
21+
label: clustering_nmi
2222
summary: Normalized mutual information (NMI) measures of the mutual dependence between the real and simulated spatial clusters.
2323
description: |
2424
Normalized Mutual Information used in spatial clustering to measure the agreement between two different clusterings, scaled to [0, 1].
@@ -31,7 +31,7 @@ info:
3131
max: 1
3232
maximize: true
3333
- name: svg_recall
34-
label: recall
34+
label: svg_recall
3535
summary: Recall measures the proportion of real SVG correctly identified in the simulated dataset.
3636
description: |
3737
Recall used in identifying spatial variable genes, measuring the true positive rate.
@@ -41,7 +41,7 @@ info:
4141
max: 1
4242
maximize: true
4343
- name: svg_precision
44-
label: precision
44+
label: svg_precision
4545
summary: Precision measures the proportion of correctly identified items in simulated datasets.
4646
description: |
4747
Precision used in identifying spatial variable genes, measuring the accuracy of positive predictions.
@@ -51,7 +51,7 @@ info:
5151
max: 1
5252
maximize: true
5353
- name: ctdeconvolute_rmse
54-
label: RMSE
54+
label: ctdeconvolute_rmse
5555
summary: Root Mean Square deviation is calculated between the true and predicted proportion of per cell type.
5656
description: |
5757
Root Mean Squared Error used in cell type deconvolution to measure the difference between observed and predicted values.
@@ -64,7 +64,7 @@ info:
6464
max: +Inf
6565
maximize: false
6666
- name: ctdeconcolute_jsd
67-
label: JSD
67+
label: ctdeconcolute_jsd
6868
summary: Jensen-Shannon divergence (JSD) is calculated between the true and predicted proportion per cell type in all spots.
6969
description: |
7070
Jensen-Shannon Divergence used in cell type deconvolution to measure the similarity between two probability distributions.
@@ -77,7 +77,7 @@ info:
7777
max: 1
7878
maximize: false
7979
- name: crosscor_mantel
80-
label: mantel_stat
80+
label: crosscor_mantel
8181
summary: Mantel statistic is the test statistic for the Mantel test, which is a correlation coefficient calculated between bivariate Moran’s I of real dataset and that of in simulation dataset.
8282
description: |
8383
Mantel statistic used in spatial cross-correlation to test the correlation between two distance matrices.
@@ -90,7 +90,7 @@ info:
9090
max: 1
9191
maximize: true
9292
- name: crosscor_cosine
93-
label: cosine
93+
label: crosscor_cosine
9494
summary: Cosine similarity measures similarity between bivariate Moran’s I of real dataset and that of in simulation dataset.
9595
description: |
9696
Cosine similarity used in spatial cross-correlation to measure the cosine of the angle between two non-zero vectors.

0 commit comments

Comments
 (0)