Minor task updates (#11)

* minor task updates

* minor changes to descriptions

Author: rcannood

_viash.yaml

@@ -1,4 +1,4 @@
-viash_version: 0.9.0
+viash_version: 0.9.4
 
 name: task_spatial_simulators
 organization: openproblems-bio
@@ -64,7 +64,7 @@ links:
   docker_registry: ghcr.io
 
 info:
-  # image: thumbnail.svg
+  image: thumbnail.svg
 
   test_resources:
     - type: s3
@@ -79,4 +79,4 @@ repositories:
 
 config_mods: |
   .runners[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" }
-  .runners[.type == "nextflow"].config.script := "process.errorStrategy = 'ignore'"
+  .runners[.type == "nextflow"].config.script := "process.errorStrategy = 'ignore'"

src/api/comp_process_datasets.yaml

@@ -53,11 +53,11 @@ argument_groups:
           test_default: MOBNEW
       - type: string
         name: --dataset_url_spatial
-        description: Link to the original source of the dataset.
+        description: Link to the original source of the spatial dataset.
         required: false
       - type: string
         name: --dataset_url_singlecell
-        description: Link to the original source of the dataset.
+        description: Link to the original source of the single-cell dataset.
         required: false
       - type: string
         name: --dataset_reference
@@ -66,35 +66,35 @@ argument_groups:
         required: false
       - type: string
         name: --dataset_reference_spatial
-        description: A doi for the dataset.
+        description: A doi for the spatial dataset.
         example: 10.1234/s1234-5678-9012-3
         required: false
       - type: string
         name: --dataset_reference_singlecell
-        description: A doi for the dataset.
+        description: A doi for the single-cell dataset.
         example: 10.1234/s1234-5678-9012-3
         required: false
       - type: string
         name: --dataset_summary_spatial
-        description: Short description of the dataset.
+        description: Short description of the spatial dataset.
         required: true
         info: 
           test_default: MOBNEW
       - type: string
         name: --dataset_summary_singlecell
-        description: Short description of the dataset.
+        description: Short description of the single-cell dataset.
         required: true
         info: 
           test_default: MOBNEW
       - type: string
         name: --dataset_description_spatial
-        description: Long description of the dataset.
+        description: Long description of the spatial dataset.
         required: true
         info: 
           test_default: MOBNEW
       - type: string
         name: --dataset_description_singlecell
-        description: Long description of the dataset.
+        description: Long description of the single-cell dataset.
         required: true
         info: 
           test_default: MOBNEW

src/workflows/run_benchmark/config.vsh.yaml

@@ -64,4 +64,4 @@ dependencies:
   - name: metrics/ks_statistic_sc_features
   - name: process_datasets/generate_sim_spatialcluster
 runners:
-  - type: nextflow
+  - type: nextflow

src/workflows/run_benchmark/main.nf

@@ -24,8 +24,7 @@ methods = [
 metrics = [
   downstream, 
   ks_statistic_gene_cell,
-  ks_statistic_sc_features,
-  ks_statistic_spatial
+  ks_statistic_sc_features
 ]
 
 workflow run_wf {