Imageomics Institute

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66 repositories

HDR-anomaly-challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Anomaly ML Challenge.
anomaly-detection butterflies hybrid-detection ml-challenge
Python
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MIT License
•2•4•3•3•Updated Jan 24, 2025Jan 24, 2025
pybioclip
Public
Python package that simplifies using the BioCLIP foundation model.
Python
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MIT License
•4•24•6•2•Updated Jan 23, 2025Jan 23, 2025
SST
Public
Python
•0•4•0•8•Updated Jan 23, 2025Jan 23, 2025
Finer-CAM
Public
This is an official implementation for Finer-CAM: Spotting the Difference Reveals Finer Details for Visual Explanation.
Python
•0•6•0•0•Updated Jan 22, 2025Jan 22, 2025
NEON_beetles_masks
Public
Python
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MIT License
•0•0•0•0•Updated Jan 21, 2025Jan 21, 2025
char-sim
Public
Pipeline to create model for comparing character state descriptions including ontology similarity
Python
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MIT License
•1•0•5•0•Updated Jan 21, 2025Jan 21, 2025
phylo-diffusion
Public
Code Repository for Phylo-Diffusion. Accepted at ECCV 2024
Python
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MIT License
•1•3•1•0•Updated Jan 15, 2025Jan 15, 2025
dna-trait-analysis
Public
Goal: to find associations between dna data and visual traits.
Jupyter Notebook
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MIT License
•0•2•5•0•Updated Jan 9, 2025Jan 9, 2025
animal-id
Public
Currently add viewpoint classifier only, but will update entire pipeline
Python
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MIT License
•0•0•0•2•Updated Jan 8, 2025Jan 8, 2025
snakemake-workshop
Public
Lesson on creating a Snakemake Workflow with an Imageomics emphasis
Other
•0•1•4•0•Updated Jan 7, 2025Jan 7, 2025
kabr-tools
Public
Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.
annotation animal-behavior-recognition drone-videos
Jupyter Notebook
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MIT License
•0•3•21•10•Updated Jan 6, 2025Jan 6, 2025
Andromeda
Public
A website that enables users to explore high-dimensional image data
Jupyter Notebook
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MIT License
•1•2•7•1•Updated Jan 4, 2025Jan 4, 2025
HComPNet
Public
This repository presents the PyTorch code for HComP-Net (Hierarchy aligned Commonality through Prototypical Networks)
computer-vision evolution traits phylogeny explainable-ai
Python
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MIT License
•1•0•0•14•Updated Dec 23, 2024Dec 23, 2024
Imageomics-guide
Public
Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.
git metadata documentation data guide best-practices models projects collaborative-workflows cli-cheatsheet
Python
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Creative Commons Zero v1.0 Universal
•0•2•11•0•Updated Dec 20, 2024Dec 20, 2024
wing-segmentation
Public
Butterfly wing segmentation
rgb segmentation butterfly ruler whitebalance colorchecker wing-segmentation heliconius forewings hindwings
Jupyter Notebook
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MIT License
•0•0•1•4•Updated Dec 16, 2024Dec 16, 2024
2025-02-11-osu-online
Public
Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility
HTML
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Other
•0•0•0•0•Updated Dec 13, 2024Dec 13, 2024
Butterfly-mimicry
Public
Exploring the influence of acuity on classification accuracy and mimicry in Heliconius butterflies.
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Dec 13, 2024Dec 13, 2024
data-workshop-AH-2024
Public
Repository for Mastering Data Management Workshop at the All Hands 2024.
Jupyter Notebook
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Creative Commons Zero v1.0 Universal
•2•2•0•0•Updated Nov 26, 2024Nov 26, 2024
HDR-anomaly-challenge-sample
Public
Sample Submission Repository for the 2024 HDR Anomaly Challenge
sample-code anomaly-detection butterflies ml-challenge
Jupyter Notebook
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MIT License
•4•6•1•0•Updated Nov 25, 2024Nov 25, 2024
2018-NEON-beetles-processing
Public
Processing code and exploratory notebooks for BeetlePalooza dataset (2018 NEON Ethanol-preserved Ground Beetles).
annotation images eda segmentation beetles
Jupyter Notebook
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MIT License
•2•0•0•3•Updated Nov 16, 2024Nov 16, 2024
cautious-robot
Public
Simple images from CSV downloader that runs and records checksums on downloaded image folder.
csv download images checksums verifier downsized
Python
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MIT License
•0•2•8•1•Updated Nov 6, 2024Nov 6, 2024
VLM4Bio
Public
Code for VLM4Bio, a benchmark dataset of scientific question-answer pairs used to evaluate pretrained VLMs for trait discovery from biological images.
fish bird biology cv benchmarks image-classification image-recognition traits butterfly vlms
Python
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Apache License 2.0
•2•5•0•0•Updated Oct 31, 2024Oct 31, 2024
parquet-cli
Public
An container for more convenient use of Parquet files at the command line.
Dockerfile
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MIT License
•0•0•2•0•Updated Oct 18, 2024Oct 18, 2024
color-calibration
Public
Provides python code for calibrating image colors containing color cards
Python
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MIT License
•0•0•1•0•Updated Oct 14, 2024Oct 14, 2024
bioclip
Public
This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].
computer-vision taxonomy clip knowledge-guided-machine-learning imageomics
Python
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Other
•14•182•2•0•Updated Oct 3, 2024Oct 3, 2024
distributed-downloader
Public
MPI-based distributed downloading tool for retrieving data from diverse domains.
downloader dataset-generation mpi-applications
Python
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MIT License
•0•2•7•2•Updated Oct 1, 2024Oct 1, 2024
bioclip-vector-db
Public
Vector database training data retrieval of BioCLIP-embedded nearest neighbors.
MIT License
•0•0•3•1•Updated Sep 4, 2024Sep 4, 2024
BeetlePalooza-2024
Public
BeetlePalooza collaborative hands-on development event to be held at OSU August 12-15
Jupyter Notebook
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Creative Commons Zero v1.0 Universal
•0•3•12•0•Updated Aug 21, 2024Aug 21, 2024
2024-08-16-osu-online
Public
Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility
HTML
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Other
•0•0•0•0•Updated Aug 21, 2024Aug 21, 2024
SlowFast
Public
PySlowFast: video understanding codebase from FAIR for reproducing state-of-the-art video models.
Python
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Apache License 2.0
•1.2k•0•0•0•Updated Aug 20, 2024Aug 20, 2024