Repositories list

• awesome-breast-imaging-resources

  Public
  Relevant papers on the research in Breast imaging

  3•8•0•0•Updated Aug 12, 2025Aug 12, 2025

• MICCAI-2023-Route-interpret-repeat-CXRs

  Public
  [MICCAI 2023, top 14%] Official repository of paper: Distilling BlackBox to Interpretable models for Efficient Transfer Learning

  medical-imaginginterpretabilityexplainable-ai+ 4mimic-cxrchexpertchestxraymiccai2023

  Python

  •

  MIT License

  •3•18•0•0•Updated Aug 2, 2025Aug 2, 2025

• ICML-2023-Route-interpret-repeat

  Public
  [ICML 2023] Official repository of paper: Dividing and Conquering a BlackBox to a Mixture of Interpretable Models: Route, Interpret, Repeat

  computer-visionpytorchmedical-imaging+ 9interpretabilityexplainable-aichest-xraysexplainabilitymimic-cxrham10000cub200-2011+ 2

  Jupyter Notebook

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  MIT License

  •4•25•0•0•Updated Aug 2, 2025Aug 2, 2025

• Mammo-CLIP

  Public
  [MICCAI 2024, top 11%] Official Pytorch implementation of Mammo-CLIP: A Vision Language Foundation Model to Enhance Data Efficiency and Robustness in Mammography

  clipmiccaimammogram+ 12rsnaretinanetmultimodalvision-and-languagebreast-cancer-classificationbreast-cancer-detectionefficientnet+ 5

  Python

  •

  Creative Commons Attribution 4.0 International

  •20•69•1•0•Updated Aug 2, 2025Aug 2, 2025

• Ladder

  Public
  [ACL 2025] Official Pytorch implementation of LADDER: Language-Driven Slice Discovery and Error Rectification in Vision Classifiers

  aclcnnvit+ 12representation-learningclipwaterbirdscelebamultimodal-learningvision-and-languagemetashift+ 5

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •5•10•0•0•Updated Jul 24, 2025Jul 24, 2025

• HA-GAN

  Public
  Official PyTorch implementation for HA-GAN, a memory efficient 3D GAN, accepted to IEEE J-BHI

  Jupyter Notebook

  •15•58•10•0•Updated Jan 4, 2025Jan 4, 2025

• SiameseAGXNet

  Public
  Classifying disease progression in chest radiographs using weak labels automatically derived from radiology reports.

  Python

  •

  Creative Commons Attribution 4.0 International

  •0•6•0•0•Updated Jul 29, 2024Jul 29, 2024

• MedSyn

  Public
  Repo for MedSyn: Text-guided Anatomy-aware Synthesis of High-Fidelity 3D CT Images

  Jupyter Notebook

  •

  Other

  •5•50•4•0•Updated Jul 12, 2024Jul 12, 2024

• TMLR23_Dynamics_of_Spurious_Features

  Public
  Official Repository for the TMLR-2023 paper titled: "Beyond Distribution Shift: Spurious Features Through the Lens of Training Dynamics"

  Jupyter Notebook

  •

  MIT License

  •0•4•0•0•Updated Jul 8, 2024Jul 8, 2024

• medsyn.github.io

  Public
  JavaScript

  •1.4k•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• drugEmbedding

  Public
  Hierarchical Embedding for Drugs

  Jupyter Notebook

  •

  Apache License 2.0

  •13•16•0•0•Updated Apr 18, 2024Apr 18, 2024

• DrasCLR

  Public
  Official PyTorch implementation for paper DrasCLR: A Self-supervised Framework of Learning Disease-related and Anatomy-specific Representation for 3D Lung CT Images, accepted by Medical Image Analysis.

  Python

  •

  MIT License

  •1•12•0•0•Updated Dec 10, 2023Dec 10, 2023

• MRE-PINN

  Public
  MR elastography with physics-informed neural networks

  Python

  •

  GNU General Public License v3.0

  •2•13•0•0•Updated Sep 22, 2023Sep 22, 2023

• BayesComBat

  Public
  Harmonization of brain imaging features using bayesian inference

  Python

  •2•18•1•0•Updated Aug 6, 2023Aug 6, 2023

• lth-explain

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

• Augmentation_By_Counterfactual_Explanation

  Public
  GitHub repo for paper: Augmentation by Counterfactual Explanation -- Fixing an Overconfident Classifier https://arxiv.org/abs/2210.12196

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 20, 2023Jan 20, 2023

• IEA

  Public
  Jupyter Notebook

  •

  MIT License

  •0•3•0•0•Updated Nov 28, 2022Nov 28, 2022

• Explanation_by_Progressive_Exaggeration

  Public
  Explanation by Progressive Exaggeration

  Jupyter Notebook

  •

  MIT License

  •3•20•2•3•Updated Nov 21, 2022Nov 21, 2022

• Adversarial-Single-Domain-Generalization

  Public
  This is the official pytorch implementation of "Adversarial Consistency for Single Domain Generalization in Medical Image Segmentation" of MICCAI2022

  Python

  •1•5•0•0•Updated Nov 18, 2022Nov 18, 2022

• BatmanLabWiki

  Public
  Documents and Wiki of the lab

  Python

  •

  Apache License 2.0

  •0•3•36•1•Updated Nov 2, 2022Nov 2, 2022

• Context_Aware_SSL

  Public
  Official PyTorch implementation for paper Context Matters: Graph-based Self-supervised Representation Learning for Medical Images

  Python

  •

  MIT License

  •5•59•3•0•Updated Oct 24, 2022Oct 24, 2022

• ukb_api

  Public
  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Jul 8, 2022Jul 8, 2022

• MSPC

  Public
  Maximum Spatial Perturbation for Image-to-Image Translation (Official Implementation)

  Python

  •2•62•1•0•Updated Jul 3, 2022Jul 3, 2022

• AGXNet

  Public
  Python

  •6•25•0•0•Updated Jun 25, 2022Jun 25, 2022

• mre_ai

  Public
  Repo for handing off MRE projects

  Jupyter Notebook

  •2•3•0•0•Updated Oct 13, 2021Oct 13, 2021

• vessel-flow-consistency-ssl

  Public
  This is the code for the MICCAI 2021 paper Self-Supervised Vessel Enhancement Using Flow-Based Consistencies.

  Jupyter Notebook

  •3•27•3•0•Updated Aug 17, 2021Aug 17, 2021

• predictElasticity

  Public
  Jupyter Notebook

  •1•6•0•0•Updated Jul 12, 2021Jul 12, 2021

• data_course

  Public
  Data Science Course

  Jupyter Notebook

  •2•3•0•0•Updated Feb 7, 2021Feb 7, 2021

• Semi-paired-Association-Test

  Public
  Semi-paired association test

  MATLAB

  •1•3•0•0•Updated Oct 19, 2020Oct 19, 2020

• ImageProcessing

  Public
  Medical Image Processing

  Jupyter Notebook

  •2•1•0•0•Updated Sep 23, 2020Sep 23, 2020