Repositories list

• veith_et_al_2025

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• napari-pyav

  Public
  PyAV-based video reader plugin for Napari

  video-readerpyavnapari-plugin+ 1napari

  Python

  •

  MIT License

  •1•3•0•0•Updated Jun 24, 2025Jun 24, 2025

• warpfield

  Public
  GPU-based 3D non-rigid volumetric registration

  gpucuda3d-registration+ 43d-imagesnon-rigid-registrationimage-transformationvolume-registration

  Python

  •

  MIT License

  •2•39•3•0•Updated Jun 2, 2025Jun 2, 2025

• staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.4k•0•0•0•Updated May 8, 2025May 8, 2025

• opm_unshear

  Public
  GPU-accelerated oblique interpolation for volume unshearing / deskewing in oblique plane microscopy (OPM)

  cudamicroscopycupy+ 2oblique-plane-microscopyoblique-interpolation

  Python

  •

  MIT License

  •0•2•0•0•Updated May 8, 2025May 8, 2025

• daio

  Public
  video and data IO tools for Python

  data-sciencehdf5h5py+ 4pyavvideo-iofast-seekframe-accurate

  Python

  •

  MIT License

  •0•6•0•0•Updated May 1, 2025May 1, 2025

• lsmaq

  Public
  Laser scanning microscope acquisition software

  MATLAB

  •

  MIT License

  •5•17•1•0•Updated Feb 27, 2025Feb 27, 2025

• dejaq

  Public
  DejaQueue – a fast alternative to multiprocessing.Queue

  multiprocessingparallelshared-memory+ 2queuesnumpy-arrays

  Python

  •

  MIT License

  •0•4•0•0•Updated Feb 23, 2025Feb 23, 2025

• Bohm_et_al_2024

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• Berlage_et_al_2024

  Public
  Code for three-dimensional random access scanning at up to 340 kHz

  Python

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• slurm_jupyter_kernel

  Public
  Manage (create, list, modify and delete) and starting jupyter kernels using sbatch

  Python

  •

  MIT License

  •5•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• groneberg_et_al_2024

  Public
  code related to Groneberg et al.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 10, 2024Jul 10, 2024

• veith_et_al_2024

  Public
  code related to Veith et al.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• hoffmann_et_al_2023

  Public
  code related to Hoffmann, M., Henninger, J. et al. Nature Communications 14, 8019 (2023).

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Nov 13, 2023Nov 13, 2023

• PyVCAM

  Public
  Fix for Issue #35 (Python3.X wrapper for Photometrics and QImaging PVCAM based cameras)

  Python

  •

  MIT License

  •20•0•0•0•Updated Sep 18, 2023Sep 18, 2023

• ccberlin

  Public archive
  homepage

  HTML

  •1•0•0•0•Updated Jul 6, 2023Jul 6, 2023

• ndview

  Public
  multi-dimensional array viewer for jupyter

  Python

  •

  MIT License

  •0•2•0•0•Updated Jan 12, 2023Jan 12, 2023

• saturnXY_mount

  Public
  custom mount for the saturn galvo scanners

  MIT License

  •0•0•0•0•Updated Apr 6, 2022Apr 6, 2022

• schulze-henninger2018

  Public
  Python

  •0•1•0•0•Updated Apr 6, 2018Apr 6, 2018