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    • readfish

      Public
      CLI tool for flexible and fast adaptive sampling on ONT sequencers
      Python
      GNU General Public License v3.0
      35000Updated Feb 19, 2025Feb 19, 2025
    • sshash

      Public
      A compressed, associative, exact, and weighted dictionary for k-mers.
      C++
      MIT License
      18001Updated Dec 9, 2024Dec 9, 2024
    • Minimalistic large language model 3D-parallelism training - Forked to train Petagraph
      Python
      Apache License 2.0
      162000Updated Nov 6, 2024Nov 6, 2024
    • ricu

      Public
      🏥 ICU data with R 🏥
      R
      GNU General Public License v3.0
      11010Updated Apr 19, 2024Apr 19, 2024
    • This GitHub Repo contains all the code for the Master Thesis Utilizing Deep Language Models for the Medical Information Extraction. The data is on a secure cluster.
      Jupyter Notebook
      1000Updated Apr 7, 2024Apr 7, 2024
    • Master project of Victoria Barenne. Advised by Amir, Alizee and Hugo.
      Jupyter Notebook
      1000Updated Sep 11, 2023Sep 11, 2023
    • Fork of the HIRID-ICU-Benchmark used to study fairness concerns for the fair ML in ICU project.
      Python
      MIT License
      11000Updated May 27, 2023May 27, 2023
    • Laplace

      Public
      Laplace approximations for Deep Learning.
      Python
      MIT License
      76000Updated Jul 15, 2021Jul 15, 2021
    • nextflow

      Public
      A DSL for data-driven computational pipelines
      Groovy
      Apache License 2.0
      666000Updated Apr 30, 2021Apr 30, 2021
    • sarek

      Public
      Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
      Nextflow
      MIT License
      430000Updated Mar 18, 2021Mar 18, 2021
    • A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      BSD 3-Clause "New" or "Revised" License
      5.1k000Updated Feb 18, 2021Feb 18, 2021
    • COVID-19 Tracker
      Java
      1000Updated Apr 11, 2020Apr 11, 2020
    • toil

      Public
      A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python
      Python
      Apache License 2.0
      240000Updated Dec 18, 2018Dec 18, 2018
    • shogun

      Public
      The Shogun Machine Learning Toolbox (Source Code)
      C++
      1k100Updated Oct 14, 2012Oct 14, 2012
    • The Shogun Machine Learning Toolbox (Data Sets)
      Objective-C
      80100Updated Jun 9, 2012Jun 9, 2012
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