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    18 repositories

    • MetaScope

      Public
      An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
      R
      •
      GNU General Public License v3.0
      •8•17•1•0•Updated Apr 3, 2025Apr 3, 2025

    • TBSignatureProfiler

      Public
      Profile RNA-seq data using published TB gene signatures
      tuberculosisbiomarkersbioconductor-packagegene-signatures
      R
      •
      Other
      •12•12•0•0•Updated Apr 3, 2025Apr 3, 2025

    • BatchQC

      Public
      Batch Effects Quality Control Software
      R
      •
      Other
      •10•8•9•0•Updated Mar 18, 2025Mar 18, 2025

    • LegATo

      Public
      An R-based Longitudinal mEtaGenomic Analysis Toolkit for microbiome data
      bioinformaticsanalysismetagenomicsbioconductormicrobiomelongitudinal
      R
      •
      Other
      •0•2•0•0•Updated Feb 6, 2025Feb 6, 2025

    • metascope-docs

      Public
      Repository holding documents for the MetaScope website
      0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • LegATo-docs

      Public
      Docs for the LegATo website
      0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • curatedTBExplorer

      Public
      This is the repository for the curatedTBExplorer shiny interface to view and analyze the curatedTBData
      R
      •
      Other
      •0•1•4•0•Updated Oct 2, 2024Oct 2, 2024

    • curatedTBExplorer-docs

      Public
      Documentation for the curatedTBExplorer
      0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • TBSignatureProfiler-docs

      Public
      A repository to host the files for the TBSignatureProfiler website.
      0•0•0•0•Updated May 7, 2024May 7, 2024

    • curatedTBData

      Public
      Curation of existing TB gene expression datasets
      R
      •
      Other
      •3•1•0•0•Updated Mar 12, 2024Mar 12, 2024

    • animalcules

      Public
      R shiny app for interactive microbiome analysis
      R
      •
      Other
      •19•55•3•1•Updated Feb 1, 2024Feb 1, 2024

    • wejlab.github.io

      Public
      Repository for wejlab.github.io
      0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • animalcules-docs

      Public
      0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • singleCellTK

      Public
      Interactively Analyze scRNA-Seq Data
      R
      •
      Other
      •79•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • ASSIGN

      Public
      Adaptive Signature Selection and InteGratioN
      R
      •
      Other
      •0•2•0•0•Updated May 26, 2023May 26, 2023

    • sctk_docs

      Public
      Documentation Source for singleCellTK
      2•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • materials

      Public
      0•0•0•0•Updated Jan 11, 2020Jan 11, 2020

    • PathoStat

      Public
      The purpose of this package is to perform Statistical Analysis on the PathoScope generated reports files.
      R
      •9•2•2•0•Updated Oct 22, 2018Oct 22, 2018