Dear EDTA developers,
I have a question regarding a message that consistently appears during the homology-based annotation step.
The EDTA pipeline finishes successfully and all expected output files are generated. However, during the homology-based annotation stage I consistently observe 10 identical messages of the following form:
Aborted bash -c 'timeout -s KILL 188s blastn
-db genome.fa.mod.LTR.intact.raw.fa
-query <(echo -e "TGACGTCAGCGTGACGTCAGCATGACGTCATCAGATGACGTCAGCATGACGTCATCAG...")
-outfmt 6 -word_size 7 -evalue 1e-5 -dust no
The only difference between the messages is the process ID. All 10 occurrences appear to involve the same query sequence.
Despite these messages, EDTA completes normally and produces all expected output files.
Could you please clarify whether this is expected behaviour, or whether it indicates that some BLAST searches are being aborted unexpectedly?
Thank you very much for your time.
Best,
Marcin
Dear EDTA developers,
I have a question regarding a message that consistently appears during the homology-based annotation step.
The EDTA pipeline finishes successfully and all expected output files are generated. However, during the homology-based annotation stage I consistently observe 10 identical messages of the following form:
Aborted bash -c 'timeout -s KILL 188s blastn
-db genome.fa.mod.LTR.intact.raw.fa
-query <(echo -e "TGACGTCAGCGTGACGTCAGCATGACGTCATCAGATGACGTCAGCATGACGTCATCAG...")
-outfmt 6 -word_size 7 -evalue 1e-5 -dust no
The only difference between the messages is the process ID. All 10 occurrences appear to involve the same query sequence.
Despite these messages, EDTA completes normally and produces all expected output files.
Could you please clarify whether this is expected behaviour, or whether it indicates that some BLAST searches are being aborted unexpectedly?
Thank you very much for your time.
Best,
Marcin