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Try to verify with google
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‎.github/DISCUSSION_TEMPLATE/general.yaml‎

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body:
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- type: checkboxes
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attributes:
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label: Checks
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options:
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- label: I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing discussions](https://github.com/greenelab/lab-website-template/discussions) for answers first.
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required: true
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- type: input
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id: repo
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attributes:
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label: Link to your website repo
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description: "In almost all cases, **we cannot help you if you don't provide this**."
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placeholder: ex. https://github.com/greenelab/greenelab.com
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validations:
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required: true
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- type: input
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id: version
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attributes:
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label: Version of Lab Website Template you are using
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description: See your `CITATION.cff` file.
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placeholder: ex. 1.0.0
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validations:
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required: true
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- type: textarea
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id: description
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attributes:
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label: Description
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description: |
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Describe your issue in as much detail as possible. For example: What happened? What did you expect to happen? How can we reproduce the problem? What browser are you seeing the problem in?
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placeholder: Description
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validations:
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required: true

‎.github/DISCUSSION_TEMPLATE/q-a.yaml‎

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body:
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- type: checkboxes
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attributes:
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label: Checks
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options:
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- label: I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing discussions](https://github.com/greenelab/lab-website-template/discussions) for answers first.
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required: true
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- type: input
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id: repo
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attributes:
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label: Link to your website repo
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description: "In almost all cases, **we cannot help you if you don't provide this**."
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placeholder: ex. https://github.com/greenelab/greenelab.com
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validations:
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required: true
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- type: input
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id: version
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attributes:
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label: Version of Lab Website Template you are using
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description: See your `CITATION.cff` file.
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placeholder: ex. 1.0.0
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validations:
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required: true
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- type: textarea
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id: description
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attributes:
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label: Description
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description: |
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Describe your issue in as much detail as possible. For example: What happened? What did you expect to happen? How can we reproduce the problem? What browser are you seeing the problem in?
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placeholder: Description
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validations:
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required: true

‎.github/ISSUE_TEMPLATE/config.yml‎

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blank_issues_enabled: true
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contact_links:
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- name: 💬 Start a discussion
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url: https://github.com/greenelab/lab-website-template/discussions
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about: I need help, I have a question, or other discussion.
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- name: 📚 Docs issue
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url: https://github.com/greenelab/lab-website-template-docs/issues
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about: I have a question or issue related to the template documentation.

‎.github/ISSUE_TEMPLATE/issue.yaml‎

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name: 🐞 Create an issue
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description: I think I've discovered a bug, I want to request a feature/change, or other issue.
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body:
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- type: checkboxes
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attributes:
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label: Checks
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options:
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- label: I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing discussions](https://github.com/greenelab/lab-website-template/discussions) for answers first.
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required: true
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- type: input
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id: repo
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attributes:
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label: Link to your website repo
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description: "In almost all cases, **we cannot help you if you don't provide this**."
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placeholder: ex. https://github.com/greenelab/greenelab.com
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validations:
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required: true
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- type: input
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id: version
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attributes:
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label: Version of Lab Website Template you are using
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description: See your `CITATION.cff` file.
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placeholder: ex. 1.0.0
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validations:
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required: true
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- type: textarea
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id: description
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attributes:
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label: Description
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description: |
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Describe your issue in as much detail as possible. For example: What happened? What did you expect to happen? How can we reproduce the problem? What browser are you seeing the problem in?
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placeholder: Description
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validations:
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required: true

‎.github/user_pull_request_template.md‎

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This website is based on the Lab Website Template.
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See its documentation for working with this site:
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https://greene-lab.gitbook.io/lab-website-template-docs

‎.github/workflows/build-preview.yaml‎

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steps:
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- name: Debug dump
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if: runner.debug == '1'
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uses: crazy-max/ghaction-dump-context@v2
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- name: Checkout branch contents
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if: github.event.action != 'closed'
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uses: actions/checkout@v4
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with:
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repository: ${{ github.event.pull_request.head.repo.full_name }}
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id: pages
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uses: actions/configure-pages@v4
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- uses: jwalton/gh-find-current-pr@master
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if: github.event.action != 'closed'
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id: pr
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with:
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state: all
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- name: SSH debug
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if: runner.debug == '1'
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uses: mxschmitt/action-tmate@v3
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- name: Build preview version of site
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if: github.event.action != 'closed'
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run: |
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JEKYLL_ENV=production bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path || '' }}/${{ env.PREVIEWS_FOLDER }}/pr-${{ env.pr }}"
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env:
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pr: ${{ steps.pr.outputs.pr }}
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JEKYLL_ENV=production bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path || '' }}/${{ env.PREVIEWS_FOLDER }}/pr-${{ github.event.number }}"
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- name: Commit preview to Pages branch
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if: github.event.action != 'closed'
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uses: rossjrw/[email protected]
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with:
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source-dir: _site
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umbrella-dir: ${{ env.PREVIEWS_FOLDER }}
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- name: Checkout Pages branch
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uses: actions/checkout@v4
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with:
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ref: gh-pages
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- name: Clean up preview folders
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uses: actions/github-script@v7
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with:
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script: |
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const { rm } = require("fs").promises;
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const { PREVIEWS_FOLDER } = process.env;
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const { owner, repo } = context.repo;
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const prs = (await github.rest.pulls.list({ owner, repo, state: "closed" })).data;
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for (const { number } of prs)
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await rm(`${PREVIEWS_FOLDER}/pr-${number}`, { recursive: true, force: true });
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- name: Commit changed files
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uses: stefanzweifel/git-auto-commit-action@v5
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with:
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branch: gh-pages
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commit_message: "Clean up previews"

‎.github/workflows/build-site.yaml‎

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steps:
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- name: Debug dump
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if: runner.debug == '1'
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uses: crazy-max/ghaction-dump-context@v2
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- name: Checkout branch contents

‎.github/workflows/first-time-setup.yaml‎

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steps:
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- name: Debug dump
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if: runner.debug == '1'
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uses: crazy-max/ghaction-dump-context@v2
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- name: Create Pages branch
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# clean slate, as if starting from orphan branch
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- name: Clear Pages branch
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run: rm -rf * .github .docker .gitignore
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run: rm -rf ./* .github .docker .gitignore
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# prevent GitHub from running Jekyll a second time after build
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- name: Make .nojekyll file
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run: |
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user="${{ github.repository_owner }}"
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description="An engaging 1-3 sentence description of your lab."
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printf "\nUSER=${user}" >> $GITHUB_ENV
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printf "\nDESCRIPTION=${description}" >> $GITHUB_ENV
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printf "\nUSER=%s" "$user" >> "$GITHUB_ENV"
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printf "\nDESCRIPTION=%s" "$description" >> "$GITHUB_ENV"
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- name: Personalize readme for user
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run: |
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![on-pull-request](../../actions/workflows/on-pull-request.yaml/badge.svg)
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![on-schedule](../../actions/workflows/on-schedule.yaml/badge.svg)
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# ${{ env.USER }}'s Website
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# %s's Website
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Visit **[website url](#)** 🚀
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_Built with [Lab Website Template](https://greene-lab.gitbook.io/lab-website-template-docs)_
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" > README.md
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" "${{ env.USER }}" > README.md
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- name: Personalize Jekyll config for user
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uses: actions/github-script@v7
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- name: Commit changed files
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uses: stefanzweifel/git-auto-commit-action@v5
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with:
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commit_message: "Setup repo"
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commit_message: "Set up repo"

‎.github/workflows/update-citations.yaml‎

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steps:
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- name: Debug dump
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if: runner.debug == '1'
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uses: crazy-max/ghaction-dump-context@v2
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- name: Checkout branch contents
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repository: ${{ github.event.pull_request.head.repo.full_name }}
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ref: ${{ github.head_ref }}
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- name: Setup Python
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- name: Set up Python
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if: github.event.action != 'closed'
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uses: actions/setup-python@v5
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with:

‎.github/workflows/update-url.yaml‎

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steps:
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- name: Debug dump
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if: runner.debug == '1'
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uses: crazy-max/ghaction-dump-context@v2
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- name: Get Pages url

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