File tree Expand file tree Collapse file tree 3 files changed +12
-15
lines changed Expand file tree Collapse file tree 3 files changed +12
-15
lines changed Original file line number Diff line number Diff line change 1- @article {Langille2013NatureBioTech ,
2- title ={ Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences} ,
3- author ={ Langille and Zaneveld et al.} ,
4- journal ={ Nature Biotechnology} ,
5- volume ={ 31} ,
6- number ={ 9} ,
7- pages ={ 815-823} ,
8- year ={ 2013} ,
9- publisher ={ Nature Publishing Group} ,
10- doi ={ 10.1038/nbt.2676}
1+ @article {Douglas2019bioRxiv ,
2+ title ={ PICRUSt2: An improved and extensible approach for metagenome inference} ,
3+ author ={ Douglas et al.} ,
4+ journal ={ bioRxiv} ,
5+ year ={ 2019} ,
6+ doi ={ 10.1101/672295}
117}
128
Original file line number Diff line number Diff line change 1313
1414plugin = Plugin (
1515 name = 'picrust2' ,
16- version = "2019.4 " ,
16+ version = "2019.7 " ,
1717 website = 'https://github.com/gavinmdouglas/q2-picrust2' ,
1818 package = 'q2_picrust2' ,
1919 description = ('This QIIME 2 plugin wraps the default 16S PICRUSt2 pipeline to run '
2020 'metagenome inference based on marker gene data. Currently '
2121 'only unstratified output is supported.' ),
2222 short_description = 'Predicts gene families and pathways from 16S sequences.' ,
23+ citations = [citations ['Douglas2019bioRxiv' ]]
2324)
2425
2526plugin .methods .register_function (
4950 'be output.' )},
5051
5152 output_descriptions = {'ko_metagenome' : 'Predicted metagenome for KEGG orthologs' ,
52- 'ec_metagenome' : 'Predicted metagenome for E.C. numbers' ,
53+ 'ec_metagenome' : 'Predicted metagenome for EC numbers' ,
5354 'pathway_abundance' : 'Predicted MetaCyc pathway abundances' },
5455
5556 name = 'Default 16S PICRUSt2 Pipeline' ,
5657
5758 description = ("QIIME2 Plugin for default 16S PICRUSt2 pipeline" ),
5859
59- citations = [citations ['Langille2013NatureBioTech ' ]]
60+ citations = [citations ['Douglas2019bioRxiv ' ]]
6061)
6162
6263
9899 "used with the output of SEPP (q2-fragment-insertion) as a " +
99100 "starting point." ),
100101
101- citations = [citations ['Langille2013NatureBioTech ' ]]
102+ citations = [citations ['Douglas2019bioRxiv ' ]]
102103)
103104
Original file line number Diff line number Diff line change 22
33setup (
44 name = "q2-picrust2" ,
5- version = "2019.4 " ,
5+ version = "2019.7 " ,
66 packages = find_packages (),
77 package_data = {'q2_picrust2' : ['citations.bib' ]},
88 author = "Gavin Douglas" ,
You can’t perform that action at this time.
0 commit comments