Add automatic logging (#479)

Author: MakisH

breaking-dam-2d/fluid-openfoam/run.sh

@@ -1,10 +1,14 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 cp 0/alpha.water_orig 0/alpha.water
 blockMesh
 setFields
-touch fluid-openfoam.foam
 
 ../../tools/run-openfoam.sh "$@"
 . ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+
+close_log

breaking-dam-2d/solid-calculix/run.sh

@@ -1,4 +1,9 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 ccx_preCICE -i flap -precice-participant Solid
+
+close_log

channel-transport-reaction/chemical-fenics/run.sh

@@ -1,4 +1,9 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 python3 chemical-reaction-advection-diffusion.py
+
+close_log

channel-transport-reaction/clean-tutorial.sh

@@ -0,0 +1,11 @@
+#!/bin/sh
+set -e -u
+
+# shellcheck disable=SC1091
+. ../tools/cleaning-tools.sh
+
+clean_tutorial .
+clean_precice_logs .
+rm -fv ./*.log
+rm -fv ./*.vtu
+

channel-transport-reaction/fluid-fenics/run.sh

@@ -1,4 +1,9 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 python3 fluid.py
+
+close_log

channel-transport/fluid-nutils/run.sh

@@ -1,7 +1,12 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 python3 -m venv .venv
 . .venv/bin/activate
 pip install -r requirements.txt
 python3 fluid.py
+
+close_log

channel-transport/fluid-openfoam/run.sh

@@ -1,8 +1,12 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 blockMesh
-touch fluid-openfoam.foam
 
 ../../tools/run-openfoam.sh "$@"
 . ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+
+close_log

channel-transport/transport-nutils/run.sh

@@ -1,7 +1,12 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 python3 -m venv .venv
 . .venv/bin/activate
 pip install -r requirements.txt
 python3 transport.py
+
+close_log

elastic-tube-1d/fluid-cpp/clean.sh

@@ -5,3 +5,4 @@ set -e -u
 
 rm -rvf ./output/*.vtk
 clean_precice_logs .
+clean_case_logs .

elastic-tube-1d/fluid-cpp/run.sh

@@ -1,10 +1,15 @@
-#!/bin/sh
+#!/bin/bash
 set -e -u
 
+. ../../tools/log.sh
+exec > >(tee --append "$LOGFILE") 2>&1
+
 if [ ! -d build ]; then
   mkdir build
   cmake -S . -B build
   cmake --build build
 fi
 
 ./build/FluidSolver ../precice-config.xml
+
+close_log