Deprecate pydicom module, prep for release (#59)

Author: scaramallion

.github/workflows/pytest-builds.yml

@@ -12,7 +12,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [3.6, 3.7, 3.8]
+        python-version: [3.6, 3.7, 3.8, 3.9]
 
     steps:
     - uses: actions/checkout@v2
@@ -25,6 +25,7 @@ jobs:
     - name: Install package and dependencies
       run: |
         python -m pip install -U pip
+        python -m pip install wheel
         python -m pip install .
         python -m pip uninstall -y pylibjpeg-openjpeg
         python -m pip install git+https://github.com/pydicom/pylibjpeg-data

.github/workflows/release-deploy.yml

@@ -0,0 +1,41 @@
+name: Build package and deploy to PyPI
+
+on:
+  release:
+    types: [ published ]
+
+jobs:
+  build_deploy:
+    name: Build and deploy
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+      with:
+        submodules: true
+
+    - uses: actions/setup-python@v2
+      name: Install Python
+      with:
+        python-version: 3.9
+
+    - name: Install requirements
+
+      run: |
+        python -m pip install -U pip
+        python -m pip install twine wheel
+
+    - name: Build wheels and sdist
+      run: |
+         python setup.py sdist bdist_wheel
+
+    - uses: actions/upload-artifact@v2
+      with:
+        name: wheels
+        path: ./dist
+
+    - name: Publish package to PyPi
+      uses: pypa/gh-action-pypi-publish@master
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_PASSWORD }}

README.md

@@ -64,15 +64,12 @@ determined with:
 
 ### Usage
 #### With pydicom
-Assuming you already have *pydicom* v1.4+ and suitable plugins installed:
+Assuming you already have *pydicom* v2.1+ and suitable plugins installed:
 
 ```python
 from pydicom import dcmread
 from pydicom.data import get_testdata_file
 
-# Importing the package adds the pixel data handler to pydicom
-import pylibjpeg
-
 # With the pylibjpeg-libjpeg plugin
 ds = dcmread(get_testdata_file('JPEG-LL.dcm'))
 jpg_arr = ds.pixel_array
@@ -88,8 +85,7 @@ function:
 ```python
 from pydicom import dcmread
 from pydicom.data import get_testdata_file
-
-from pylibjpeg import generate_frames
+from pydicom.pixel_data_handlers.pylibjpeg_handler import generate_frames
 
 ds = dcmread(get_testdata_file('color3d_jpeg_baseline.dcm'))
 frames = generate_frames(ds)

docs/release_notes/v1.0.0.rst renamed to docs/changes/v1.0.0.rst

@@ -0,0 +1,11 @@
+.. _v1.2.0:
+
+1.2.0
+=====
+
+* Added support for Python 3.9
+* Removed standalone pydicom pixel data handler
+* ``The pylibjpeg.pydicom`` module is deprecated and will be removed in v2.0,
+  use pydicom instead.
+* ``get_pixel_data_decoders`` moved from ``pylibjpeg.pydicom.utils`` to
+  ```pylibjpeg.utils``

docs/release_notes/v1.1.0.rst renamed to docs/changes/v1.1.0.rst

@@ -1,11 +1,10 @@
 """Set package shortcuts."""
 
 import logging
-import sys
 
-
-from ._version import __version__
-from .utils import decode, add_handler
+from pylibjpeg._version import __version__
+from pylibjpeg.pydicom.utils import generate_frames  # deprecated
+from pylibjpeg.utils import decode
 
 
 # Setup default logging
@@ -23,18 +22,3 @@ def debug_logger():
     formatter = logging.Formatter('%(levelname).1s: %(message)s')
     handler.setFormatter(formatter)
     logger.addHandler(handler)
-
-
-try:
-    import pydicom
-    _logger.debug('pydicom module loaded')
-    from pylibjpeg.pydicom.utils import generate_frames
-
-    # We only add a handler if pydicom doesn't already have one
-    try:
-        import pydicom.pixel_data_handlers.pylibjpeg_handler
-    except ImportError:
-        add_handler()
-
-except ImportError:
-    pass

docs/changes/v1.2.0.rst

@@ -3,7 +3,7 @@
 import re
 
 
-__version__ = '1.2.0.dev0'
+__version__ = '1.2.0'
 
 
 VERSION_PATTERN = r"""