Issues with the output_folder

[mosiexx]

Dear Razvan,
First of all congrats for such a great tool! :) I hope my question is not redundant, but i really have issues with the output_folder. I don't understand why for the template data the output "temp" works, but when i put my own data sheet (metadata is according to the DK atlas as seen in the template data), neither the temp or a chosen directory works. I'm using the web-based tool.

Thanks already,
Moritz

[razvanmarinescu]

Hi Moritz, You're welcome, glad it is of use. Are you using the web tool, or the source code? Jonathan has worked on BrainPainter before, and can help look into it and debug it. Razvan

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On Wed, 18 Oct 2023 at 03:24, mosiexx ***@***.***> wrote: Dear Razvan, First of all congrats for such a great tool! :) I hope my question is not redundant, but i really have issues with the output_folder. I don't understand why for the template data the output "temp" works, but when i put my own data sheet (metadata is according to the DK atlas as seen in the template data), neither the temp or a chosen directory works. I'm using the web-based tool. Thanks already, Moritz — Reply to this email directly, view it on GitHub <#29>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAVQS67K6E3YSOGJWLU5IQ3X76U4DAVCNFSM6AAAAAA6FIQRC2VHI2DSMVQWIX3LMV43ASLTON2WKOZRHE2DSMZZGU3DGNI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[razvanmarinescu]

I've been having similar issues using the tool lately. I'll take a look at the code and update you once I have a solution to the saving issue. Best, Jonathan On Wed, Oct 18, 2023 at 3:20 PM Razvan Marinescu ***@***.***> wrote:

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Hi Moritz, You're welcome, glad it is of use. Are you using the web tool, or the source code? Jonathan has worked on BrainPainter before, and can help look into it and debug it. Razvan On Wed, 18 Oct 2023 at 03:24, mosiexx ***@***.***> wrote: > Dear Razvan, > First of all congrats for such a great tool! :) I hope my question is not > redundant, but i really have issues with the output_folder. I don't > understand why for the template data the output "temp" works, but when i > put my own data sheet (metadata is according to the DK atlas as seen in the > template data), neither the temp or a chosen directory works. I'm using the > web-based tool. > > Thanks already, > Moritz > > — > Reply to this email directly, view it on GitHub > <#29>, or > unsubscribe > <https://github.com/notifications/unsubscribe-auth/AAVQS67K6E3YSOGJWLU5IQ3X76U4DAVCNFSM6AAAAAA6FIQRC2VHI2DSMVQWIX3LMV43ASLTON2WKOZRHE2DSMZZGU3DGNI> > . > You are receiving this because you are subscribed to this thread.Message > ID: ***@***.***> >

[razvanmarinescu]

Hello again, The destination folder is in the "brainpainter" folder in the Colab notebook. If you're able to generate a preview of your images in a grid, then the images are saved in your specified output folder. In that case, you are also able to download a ZIP of the images at the bottom of the page. I've attached an image of what that looks like in the notebook. [image: image.png] Please let me know if you have any further questions and I'd be happy to help. Best, Jonathan

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On Wed, Oct 18, 2023 at 3:31 PM Jonathan Vengosh ***@***.***> wrote: I've been having similar issues using the tool lately. I'll take a look at the code and update you once I have a solution to the saving issue. Best, Jonathan On Wed, Oct 18, 2023 at 3:20 PM Razvan Marinescu ***@***.***> wrote: > Hi Moritz, > > You're welcome, glad it is of use. Are you using the web tool, or the > source code? Jonathan has worked on BrainPainter before, and can help look > into it and debug it. > > Razvan > > On Wed, 18 Oct 2023 at 03:24, mosiexx ***@***.***> wrote: > >> Dear Razvan, >> First of all congrats for such a great tool! :) I hope my question is >> not redundant, but i really have issues with the output_folder. I don't >> understand why for the template data the output "temp" works, but when i >> put my own data sheet (metadata is according to the DK atlas as seen in the >> template data), neither the temp or a chosen directory works. I'm using the >> web-based tool. >> >> Thanks already, >> Moritz >> >> — >> Reply to this email directly, view it on GitHub >> <#29>, or >> unsubscribe >> <https://github.com/notifications/unsubscribe-auth/AAVQS67K6E3YSOGJWLU5IQ3X76U4DAVCNFSM6AAAAAA6FIQRC2VHI2DSMVQWIX3LMV43ASLTON2WKOZRHE2DSMZZGU3DGNI> >> . >> You are receiving this because you are subscribed to this thread.Message >> ID: ***@***.***> >> >

[mosiexx]

Hello Jonathan & Razvan,
Thanks for your fast response. @razvanmarinescu I use the web-based tool in Google Colab, but unfortunately my problem persists. As soon as i change the data from template data to my data, im getting the following error
FileNotFoundError Traceback (most recent call last)
in <cell line: 9>()
7
8 # get all files (minus directories) from the specified output
----> 9 onlyfiles = [f for f in listdir(output_folder) if isfile(join(output_folder, f))]
10
11 images = []

FileNotFoundError: [Errno 2] No such file or directory: 'spaghetti'

Additionally i created a folder in the "output" section and addressed it in the code line, but every time its the same error. Maybe its something I'm doing wrong in general?

Best,
Moritz

[mosiexx]

Dear authors,

I fixed my issue. It was the .csv which made a lot of trouble with my data. With using a converter i solved the problem. The output works very fine now, so please feel free to close the issue.

Thanks and best,
Moritz