Fix `NativeWatcher` not ingesting hardlinked/cloned directories (Bun/pnpm installs) due to omitted events #543

Job	Run time
Tests with coverage	1m 33s
Type check, lint, smoke test	49s
test (windows-latest, 20.19.4) / Tests [Node.js 20.19.4, windows-latest, Using yarn.lock]	1m 57s
test (windows-latest, latest) / Tests [Node.js latest, windows-latest, Using yarn.lock]	1m 49s
test (macos-latest, lts/-1) / Tests [Node.js lts/-1, macos-latest, Using yarn.lock]	41s
test (ubuntu-latest, latest) / Tests [Node.js latest, ubuntu-latest, Using yarn.lock]	53s
test (macos-latest, 20.19.4) / Tests [Node.js 20.19.4, macos-latest, Using yarn.lock]	41s
test (ubuntu-latest, lts/) / Tests [Node.js lts/, ubuntu-latest, Using yarn.lock]	47s
test (windows-latest, lts/) / Tests [Node.js lts/, windows-latest, Using yarn.lock]	2m 17s
test (windows-latest, lts/-1) / Tests [Node.js lts/-1, windows-latest, Using yarn.lock]	2m 4s
test (macos-latest, lts/) / Tests [Node.js lts/, macos-latest, Using yarn.lock]	42s
test (macos-latest, latest) / Tests [Node.js latest, macos-latest, Using yarn.lock]	50s
test (ubuntu-latest, 20.19.4) / Tests [Node.js 20.19.4, ubuntu-latest, Using yarn.lock]	42s
test (ubuntu-latest, lts/-1) / Tests [Node.js lts/-1, ubuntu-latest, Using yarn.lock]	45s
Deploy	-1s
	16m 29s

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