Fix `NativeWatcher` not ingesting hardlinked/cloned directories (Bun/pnpm installs) due to omitted events #544

Job	Run time
Type check, lint, smoke test	47s
Tests with coverage	1m 25s
test (macos-latest, lts/-1) / Tests [Node.js lts/-1, macos-latest, Using yarn.lock]	44s
test (macos-latest, 20.19.4) / Tests [Node.js 20.19.4, macos-latest, Using yarn.lock]	42s
test (macos-latest, lts/) / Tests [Node.js lts/, macos-latest, Using yarn.lock]	48s
test (windows-latest, lts/-1) / Tests [Node.js lts/-1, windows-latest, Using yarn.lock]	1m 53s
test (windows-latest, lts/) / Tests [Node.js lts/, windows-latest, Using yarn.lock]	1m 51s
test (windows-latest, 20.19.4) / Tests [Node.js 20.19.4, windows-latest, Using yarn.lock]	2m 48s
test (macos-latest, latest) / Tests [Node.js latest, macos-latest, Using yarn.lock]	50s
test (ubuntu-latest, 20.19.4) / Tests [Node.js 20.19.4, ubuntu-latest, Using yarn.lock]	43s
test (ubuntu-latest, lts/) / Tests [Node.js lts/, ubuntu-latest, Using yarn.lock]	40s
test (ubuntu-latest, lts/-1) / Tests [Node.js lts/-1, ubuntu-latest, Using yarn.lock]	48s
test (ubuntu-latest, latest) / Tests [Node.js latest, ubuntu-latest, Using yarn.lock]	42s
test (windows-latest, latest) / Tests [Node.js latest, windows-latest, Using yarn.lock]	1m 52s
Deploy	0s
	16m 33s

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