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\documentclass[10pt,colorlinks=true,urlcolor=blue]{moderncv}
\usepackage{utopia}
\usepackage{breakurl}
\usepackage[yyyymmdd]{datetime}
\moderncvtheme[blue]{classic}
\usepackage[utf8]{inputenc}
%JLP\usepackage[resetlabels]{multibib}
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%\usepackage{etoolbox}
%\addbibresource{peer.bib}
%\addbibresource{pre.bib}
%\addbibresource{talks.bib}
%\addbibresource{other_talks.bib}
%\addbibresource{posters.bib}
%%
\addbibresource{pubs_peer_reviewed.bib}
\addbibresource{pubs_pre_prints.bib}
\addbibresource{pubs_conf.bib}
%\addbibresource{pubs_other.bib}
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\DeclareRefcontext{J}{labelprefix=J} %% Peer
\DeclareRefcontext{P}{labelprefix=P} %% Pre-prints
\DeclareRefcontext{I}{labelprefix=I} %% Invited Talks
\DeclareRefcontext{T}{labelprefix=T} %% Other Talks
\DeclareRefcontext{A}{labelprefix=A} %% Abstacts and Posters
% Count total number of entries in each refsection
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\usepackage{pdfpages}
\usepackage{fancyhdr}
\pagestyle{fancy}
\pagenumbering{roman}
%\chead{\textbf{Joshua T. Vogelstein Ph.D.}, Assistant Professor, JHU -- Curriculum Vitae}
\rhead{\textbf{\today}}
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\newcommand{\cvdoublecolumn}[2]{%
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%
% usage: \cvreference{name}{address line 1}{address line 2}{address line 3}{address line 4}{e-mail address}{phone number}
% Everything but the name is optxional
% If \addresssymbol, \emailsymbol or \phonesymbol are specified, they will be used.
% (Per default, \addresssymbol isn't specified, the other two are specified.)
% If you don't like the symbols, remove them from the following code, including the tilde ~ (space).
\newcommand{\cvreference}[7]{%
\textbf{#1}\newline% Name
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\ifthenelse{\equal{#7}{}}{}{\phonesymbol~#7}}
\AtBeginDocument{\recomputelengths}
\firstname{Joshua T.~}
\familyname{Vogelstein}
\address{Assistant Professor, \\
Institute for Computational Medicine \\
Johns Hopkins University \\
}{}
\email{[email protected]}
\homepage{jovo.me}
\begin{document}
\maketitle
\section{Professional Experience}
\cventry{09/19 -- now}{Joint Appointment}{Department of Biostatistics}{Johns Hopkins University (JHU)}{}{}
%\cventry{10/18 -- now}{Advisory Board}{\href{https://mind-x.io/}{Mind-X}}{}{}{}
\cventry{08/18 -- now}{\href{https://www.bme.jhu.edu/graduate/mse/degree-requirements/biomedical-data-science/}{Director of Biomedical Data Science Focus Area}}{}{}{}{}
%\cventry{01/17 -- now}{Advisory Board}{\href{https://www.pivotalpath.com/}{PivotalPath}}{}{}{}
\cventry{01/17 -- now}{Co-Founder}{\href{http://gigantum.io}{gigantum}}{}{}{}
%\cventry{2017}{Consultant}{\href{https://www.greenspringassociates.com}{Greenspring Associates}}{}{}{}
\cventry{05/16 -- now}{Visiting Scientist}
{Howard Hughes Medical Institute}{Janelia Research Campus}{}{}
\cventry{01/16 -- now}{Co-Founder}{\href{http://www.d8alab.com}{d8alab}}{}{}{}
%\cventry{2016}{Consultant}{Scanadu}{}{}{}
\cventry{08/15 -- now}{Joint Appointment}{Department of Applied Mathematics and Statistics}{}{}{}
\cventry{08/15 -- now}{Steering Committee}
{Kavli Neuroscience Discovery Institute (KNDI)}{}{}{}
\cventry{08/15 -- 07/18}{Co-Developer}{\href{http://icm.jhu.edu/academics/undergraduate-minor/}{Computational Medicine Minor}}{}{}{}
\cventry{05/15 -- 07/17}{Co-Founder and Faculty Advisor}{\href{http://medhacks.org}{MedHacks}}{}{}{}
\cventry{08/14 -- now}{Assistant Professor}{Department of Biomedical Engineering}{Johns Hopkins University (JHU)}{}{}
\cventry{08/14 -- now}{Core Faculty}
{Institute for Computational Medicine (ICM)}{}{}{}
\cventry{08/14 -- now}{Core Faculty}
{Center for Imaging Science (CIS)}{}{}{}
\cventry{08/14 -- now}{Joint Appointment}{Department of Neuroscience}{}{}{}
\cventry{08/14 -- now}{Joint Appointment}{Department of Computer Science}{}{}{}
\cventry{08/14 -- now}{Assistant Research Faculty}{Human Language Technology Center of Excellence}{}{}{}
\cventry{08/14 -- 08/18}{\href{http://icm.jhu.edu/academics/undergraduate-minor/}{Director of Undergraduate Studies}}{Institute for Computational Medicine}{}{}{}
\cventry{10/12 -- now}{Affiliated Faculty}{Institute for Data Intensive Engineering and Sciences}{}{}{}
\cventry{01/11 -- now}{Co-Founder \& Co-Director}{\href{http://neurodata.io}{NeuroData} (formerly Open Connectome Project)}{}{}{}
\cventry{10/12 -- 08/14}{Endeavor Scientist}{Child Mind Institute}{}{}{}
\cventry{08/12 -- 08/14}{Affiliated Faculty}{Kenan Institute for Ethics}{}{}{Duke University}
\cventry{08/12 -- 08/14}{Adjunct Faculty}{Department of Computer Science}{}{}{}
\cventry{12/09 -- 01/11}{Post-Doctoral Fellow}{Department of
Applied Mathematics and Statistics}{Supervised by Carey E.~Priebe}{Johns Hopkins University}{\textbf{Research} Statistics of populations of networks.}
\cventry{07/04 -- 07/12}{Chief Data Scientist}{Global Domain Partners, LLC}{}{}{}
\cventry{06/01 -- 09/01}{Research Assistant}{Prof. Randy O'Reilly, Dept.~of Psychology}{}{}{University of Colorado}
\cventry{06/00 -- 09/00}{Clinical Engineer}{Johns Hopkins Hospital}{}{}{}
\cventry{06/99 -- 08/99}{Research Assistant under Dr. Jeffrey Williams}{Dept. of Neurosurgery, Johns Hopkins Hospital}{}{}{}
\cventry{06/98 -- 08/98}{Research Assistant under Professor Kathy Cho}{Dept. of Pathology, Johns Hopkins School of Medicine}{}{}{}
\section{Education}
\cventry{2009}{Ph.D in Neuroscience}{Johns Hopkins
School of Medicine}{\newline Advisor: Eric Young}{\newline
\textbf{Thesis:} OOPSI: a family of optical spike inference algorithms for inferring neural connectivity from population calcium imaging
}{}{}
\cventry{2009}{M.S. in Applied Mathematics \& Statistics}{ Johns Hopkins University}{}{}{}
\cventry{2002}{B.A. in Biomedical Engineering}{Washington University, St.~Louis}{}{}{}
\section{\href{https://neurodata.io/about/awards/}{Awards and Recognition}}
%\cventry{2017}{\href{http://www.hpdc.org/2017/awards/best-paper-award}{Best Presentation Award HPDC}}{Mhembere et al. (2017)}{}{}{}
%\cventry{2017}{Nonparametric Statistics of the American Statistical Association Student Paper Award}{Lee et al. (2017)}{}{}{}
\cventry{2014}{F1000 Prime Recommended}{Vogelstein et al. (2014)}{}{}{}
\cventry{2013}{Spotlight}{Neural Information Processing Systems (NIPS)}{}{}{}
\cventry{2011}{Trainee Abstract Award}{Organization for Human Brain Mapping}{}{}{}
\cventry{2008}{Spotlight}{Computational and Systems Neuroscience (CoSyNe)}{}{}{}
\cventry{2002}{Dean's List}{Washington University}{}{}{}
\section{Professional Memberships}
\cventry{SfN}{Society for Neuroscience}{}{}{}{}
%\section{Published Peer-Review Research Articles}
\begin{refsection}[pubs_peer_reviewed.bib]
%\newrefcontext{J}
\nocite{*}
\defbibnote{a1}{{Note: CV author in bold; Trainees in italics, \\
\textbf{(55 papers; top 10 cited 2,944 times; H-index 30)}}}
\printbibliography[%
title=\href{https://neurodata.io/publications/\#peer_reviewed}{Published Peer-Reviewed Research Articles},%
prenote=a1,%
heading=bibliography%
]
\end{refsection}
%\section{Conference Papers}
\begin{refsection}[pubs_conf.bib]
%\newrefcontext{A}
\nocite{*}
\printbibliography[%
title={\href{https://neurodata.io/publications/\#conf}{Conference Papers}},%
heading=bibliography,%
]
\end{refsection}
%\section{Book Chapters}
%\section{Manuscripts in Revision}
%\section{Manuscripts in First Review}
%\section{Manuscripts in Preparation for Submission}
%\section{\href{https://neurodata.io/publications/\#pre_prints}{Pre-Prints}}
\begin{refsection}[pubs_pre_prints.bib] %, pubs_excluded_entries.bib]
%\newrefcontext{P}
\nocite{*}
\printbibliography[%
title=\href{https://neurodata.io/publications/\#pre_prints}{Manuscripts in Preparation for Submission},%
heading=bibliography%
]
\end{refsection}
%\section{Invited Talks}
%\section{\href{https://neurodata.io/talks/}{Invited Talks}}
\begin{refsection}[talks_invited.bib]
%\newrefcontext{I}
\nocite{*}
\printbibliography[%
title=\href{https://neurodata.io/talks/}{Invited Talks},%
heading=bibliography%
]
\end{refsection}
%\subsection{Other Talks}
%\section{\href{https://neurodata.io/talks/}{Other Talks}}
\begin{refsection}[talks_other.bib, talks_excluded_entries.bib]
%\newrefcontext{T}
\nocite{*}
\printbibliography[%
title=\href{https://neurodata.io/talks/}{Other Talks},%
heading=bibliography%
]
\end{refsection}
%\subsection{Interviews}
%\section{Abstracts / Poster Presentations}
\begin{refsection}[posters]
%\newrefcontext{T}
\nocite{*}
\printbibliography[%
title=\href{https://neurodata.io/posters/}{Abstracts / Poster Presentations},%
heading=bibliography%
]
\end{refsection}
\section{Teaching Experience -- Ongoing Courses}
\cventry{Fall '19}{\href{https://github.com/NeuroDataDesign/Syllabus}{NeuroData Design I}}{EN.580.237/437/637}{Course Director}{enrollment 46}{}
\cventry{Spring '19}{\href{https://github.com/NeuroDataDesign/Syllabus}{NeuroData Design II}}{EN.580.438/638}{Course Director}{enrollment 18}{}
\cventry{Fall '18}{\href{https://github.com/NeuroDataDesign/Syllabus}{NeuroData Design I}}{EN.580.237/437/637}{Course Director}{enrollment 22}{}
\cventry{Spring '17}{\href{https://github.com/NeuroDataDesign/Syllabus}{NeuroData Design II}}{EN.580.238/438/638}{Course Director}{enrollment 14}{}
\cventry{Winter '17}{BME Research Intersession}{EN.580.574}{Course Director}{enrollment 6}{}
\cventry{Fall '17}{\href{https://github.com/NeuroDataDesign/Syllabus}{NeuroData Design I}}{EN.580.247/437/637}{Course Director}{enrollment 15}{}
\cventry{Spring '16}{\href{https://github.com/Upward-Spiral-Science/Syllabus}{The Art of Data Science}}{EN.580.468}{Course Director}{enrollment 24}{}
\cventry{Fall '16}{\href{https://github.com/NeuroDataDesign/Syllabus}{NeuroData Design I}}{EN.580.437}{Course Director}{enrollment 16}{}
\cventry{Fall '15}{Introduction to Computational Medicine}{}{Co-Teaching}{Course Co-Director}{}
\cventry{Spring '15}{\href{https://github.com/openconnectome/Statistical-Connectomics-Class}{Statistical Connectomics}}{EN.580.694}{Course Director}{enrollment 26}{}
% \cventry{Winter 2015}{Statistical Connectomics}{}{Neuroimaging Specialization}{Coursera}{}
\section{Teaching Experience -- One-Time}
\cventry{Spring '19}{Systems Bioengineering II}{EN.580.422}{}{2 Lectures}{}
\cventry{Spring '19}{Computational Neuroscience}{AS.080.321}{}{2 Lectures}{}
\cventry{Spring '18}{Systems Bioengineering II}{EN.580.422}{}{2 Lectures}{}
\cventry{Spring '18}{Computational Neuroscience}{AS.080.321}{}{2 Lectures}{}
\cventry{Spring '17}{Systems Bioengineering II}{EN.580.422}{}{2 Lectures}{}
\cventry{Spring '16}{Systems Bioengineering II}{EN.580.422}{}{2 Lectures}{}
\cventry{Winter '16}{Introduction to Connectomics}{EN.600.221}{}{1 Lecture}{}
\cventry{Fall '16}{BME Modeling and Design}{EN.580.111}{}{1 Lecture}{}{}
\section{Advisory Information}
\subsection{Post-Doctoral Fellows}
\cventry{08/18 -- now}{Jes\'us Arroyo, PhD}{Post-doctoral Fellow}{CIS}{JHU}{Working on graph matching and joint graph embedding.}
\cventry{07/19 -- now}{Celine Drieu, PhD}{Post-doctoral Fellow}{Kavli NDI}{JHU}{Co-Advised by Assitant Prof. Kuchibhotla, Department of Psychological and Brain Sciences. Working on understanding learning and memory using two-photon calcium imaging.}
\cventry{07/19 -- now}{Austin Grave, PhD}{Post-doctoral Fellow}{Kavli NDI}{JHU}{Co-Advised by Prof. Richard Huganir, Department of Neuroscience. Working on understanding whole brain synaptic plasticity using genetic engineering and light microscopy imaging.}
\cventry{07/18 -- now}{Audrey Branch, PhD}{Post-doctoral Fellow}{Kavli NDI}{JHU}{Co-Advised by Prof Michela Gallagher, extending brain clearing experimental technology from mice to rats. Currently with a manuscript on biorxiv.}
\cventry{09/16 -- 08/18}{Cencheng Shen, PhD}{Post-Doctoral Fellow}{CIS}{JHU}{Developed Multiscale Graph Correlation, which is currently the premiere hypothesis testing framework, and about to be integrated into SciPy, by far the world's leading scientific computing package. Currently an Assistent Professor in Department of Statistics at University of Delaware, and still an actice collaborator and grantee.}
\cventry{05/16 -- 06/17}{Leo Duan, PhD}{Post-doctoral Fellow}{CIS}{JHU}{Went on to do a second postdoc with Leo Dunson (who I did my second postdoc with). Currently an Assistant Professor at University of Florida.}
\cventry{06/16 -- 07/17}{Guilherme Franca, PhD}{Post-doctoral Fellow}{CIS}{JHU}{Worked on non-parametric clustering, with an article about to be accepted in PAMI, the leading machine learning journal. Currently a postdoc for Rene Vidal.}
\subsection{Ph.D. Students}
\cventry{08/19 -- now}{Michael Powell, MSE}{PhD advisee}{BME}{JHU}{Dissertation will focus on explainable artificial intelligence, spearheads collaboration with Andreas Muller, Co-Director of scikit-learn, the world's leading machine learning package.}
\cventry{06/19 -- now}{Jaewon Chung, MSE}{PhD advisee}{BME}{JHU}{Dissertation will focus on statistics of populations of human networks. Already co-first author and middle author on multiple manuscripts.}
\cventry{08/19 -- now}{Tommy Athey, BSE}{PhD advisee}{BME}{JHU}{Dissertation will focus on MouseLight project, spearheads collaborations with Prof. Jeremias Sulam and Michael I.~Miller.}
\cventry{08/19 -- now}{Eric Bridgeford, BSE}{PhD advisee}{Department of Biostatistics}{JHU}{Dissertation will focus on statistics of human connectomes and mitigating batch effects. Already first author on several manuscripts under review, and spearheads collaboration with Prof Brian Caffo at Biostatistics.}
\cventry{08/18 -- now}{Benjamin Pedigo, BSE}{PhD advisee}{BME}{JHU}{Dissertation will focus on analysis and modeling of the world's first whole animal connectome, in collaboration with Marta Zlatic and Albert Cardona (formerly of Janelia Research Campus). Already co-first author and middle author on multiple manuscripts.}
%\cventry{??03/19 -- 09/19}{Derek Pisner}{PhD advisee}{}{JHU/ UT Austin}{}
\cventry{08/18 -- now}{Meghana Madyastha, BSE}{PhD Co-advisee}{CS}{JHU}{Dissertation will focus on computational aspects of accelerationg learning and inference using decision forests.}
\cventry{08/16 -- now}{Vikram Chandrashekhar, BSE}{PhD advisee}{BME}{JHU}{Dissertation has focused on extending LDDMM to whole cleared brain datasets, spearheads collaboration with Prof. Karl Deisseroth's lab at Stanford, one of the world's leading neuroscientists.}
\cventry{08/14 -- 01/18}{Tyler Tomita, PhD}{}{BME}{JHU}{Developed Sparse Projection Oblique Randomer Forest in his dissertation, currently the best performing machine learning algorithm on a standard suite of over 100 benchmark problems. Currenly a postdoc with Assistant Prof. Chris Honey of Psychology and Brain Sciences.}
\subsection{M.S. Students}
\cventry{06/19 -- now}{Bijan Varjavand}{MS advisee}{BME}{JHU}{Submitted manuscript to PAMI on advancing statistics on populations of networks.}
\cventry{06/19 -- now}{Sambit Panda}{MS advisee}{BME}{JHU}{Led development of Python implementation of MGC, to be integrated into SciPy.}
\cventry{06/19 -- now}{Varun Kotharkar}{MS advisee}{AMS}{JHU}{Investigating theoretical advantages of oblique, as compared to axis-aligned, decision trees.}
\cventry{06/18 -- now}{Drishti Mannan}{MS advisee}{BME}{JHU}{Preparing manuscript introducing novel specification for large attributed networks.}
\cventry{06/18 -- 05/19}{Jaewon Chung}{MSE advisee}{BME}{JHU}{Co-first author of manuscript and co-lead developer of Python package for statistical analysis of networks. Currently a BME PhD student in my lab.}
\cventry{08/14 -- 06/17}{Greg Kiar, MSE}{}{BME}{JHU}{Lead deveoper of NDMG, the only existing ``soup to nuts'' pipeline for both functional and diffusion pipelines; co-first author of manuscript under review. Currently a PhD student at McGill University.}
\subsection{Undergraduate Students (BME unless otherwise noted)}
\cventry{06/19 -- now}{Vivek Gopalakrishnan}{BSE}{BME}{JHU}{Winner of Pistritto Fellowship.}
\cventry{06/19 -- now}{Richard Guo}{BSE}{BME}{JHU}{}
\cventry{06/19 -- now}{Ronan Perry}{BSE}{BME}{JHU}{}
\cventry{08/14 -- 08/18}{Eric Bridgeford, BSE}{}{BME}{JHU}{Currently a PhD student in Biostatistics at JHSPH in my lab.}
\cventry{08/15 -- 08/16}{Albert Lee,BSE}{}{BME}{JHU}{}
\cventry{06/15 -- 12/15}{Ron Boger, BSE}{}{BME}{JHU}{Currenly working at a computational medicine start-up in Silicon Valley.}
\cventry{05/15 -- 05/16}{Jordan Matelsky, BSE}{}{CS and Neuroscience}{JHU}{Currently a data scientist at APL.}
\cventry{02/15 -- 05/16}{Ivan Kuznetsov, BSE}{}{BME}{JHU}{Currently an MD/PhD Candidate at the UPenn, winner of \href{https://beblog.seas.upenn.edu/tag/ivan-kuznetsov/}{Soros Fellowship}.}
%\subsection{High School Students}
\subsection{Research Assistants}
\cventry{09/19 -- now}{Ross Lawrence}{Research Assistant}{BME}{JHU}{Responsible for documenting and bug fixing NDMG.}
\cventry{07/19 -- now}{Ronak Mehta}{Research Assistant}{BME}{JHU}{Finalizing three manuscripts on (1) uncertainty forests, (2) time-series dependence quantification, and (3) lifelong learning forests.}
\cventry{06/19 -- now}{Devin Crowley}{Research Assistant}{BME}{JHU}{Lead developer of our scalable Python implementaiton of LDDMM.}
\cventry{02/19 -- now}{Hayden Helm}{Assistant Research Faculty}{BME}{JHU}{Leading research efforts developing theory and methods for lifelong learning.}
\cventry{10/18 -- now}{Alex Loftus}{Research Assistant}{BME}{JHU}{Current lead developer of NDMG, transitioning from a stand-alone package to be integrated with DiPy.}
\cventry{06/18 -- now}{Benjamin Falk}{Research Engineer}{BME}{JHU}{Lead software engineer, overseas all development projects, solely responsible for all cloud infrastructure.}
\cventry{03/16 -- now}{Jesse Patsolic}{Assistant Research Faculty}{BME}{JHU}{Lead developer converting our extensions to decision forests to be merged into sklearn.}
\subsection{Summer Interns}
\cventry{Summer '19}{Kareef Ullah}{Summer Intern}{BME}{JHU}{}
\cventry{Summer '19}{Shunan Wu}{Summer Intern}{BME}{JHU}{}
\cventry{Summer '19}{Shiyu Sun}{Summer Intern}{BME}{JHU}{}
\cventry{Summer '19}{Sander Shulhoff}{Summer Intern}{BME}{JHU}{}
\cventry{Summer '19}{Kiki Zhang}{Summer Intern}{BME}{JHU}{}
\cventry{Summer '18}{Papa Kobina Van Dyck}{Summer Intern}{BME}{JHU}{}
\section{Thesis Committee Service}% (BME unless otherwise noted)}
\subsection{}
\cventry{}{Kutten, Kwame}{JHU Ph.D. Student}{Graduated 2018}{}{}{}
\subsection{}
\cventry{}{Browne, James}{Computer Science}{JHU Ph.D. Student}{Graduated 2019}{}
\cventry{}{Mhembere, Disa}{Computer Science}{JHU Ph.D. Student}{Graduated 2019}{}
\cventry{}{Zheng, D}{Computer Science}{JHU Ph.D. Student}{Graduated 2017}{}
\cventry{}{Wang, Shangsi}{Applied Mathematics and Statistics}{JHU Ph.D. Student}{Graduated 2018}{}
\cventry{}{Tang, Runze}{Applied Mathematics and Statistics}{JHU Ph.D. Student}{Graduated 2018}{}
\cventry{}{Lee, Youjin}{Biostatistics}{JHU Ph.D. Student}{Graduated 2018}{}
\cventry{}{Binkiewicz, Norbert}{Statistics}{University of Wisconsin Ph.D. Student}{Graduated 2017}{}
\cventry{}{Gray-Roncal, Will}{Computer Science}{JHU Ph.D. Student}{Graduated 2016}{}
\section{Research}
\textbf{A table showing my direct (total) cost expentidures since being hired is below, indicating a steady increase each year of over 30\%. Details for funding sources follow, including the average annual direct (total) costs per grant, when available.
}
\begin{flushleft}
FY15: \$113,761 (\$168,924),
\linebreak FY16: \$360,123 (\$524,225),
\linebreak FY17: \$459,523 (\$709,019),
\linebreak FY18: \$550,011 (\$887,186),
\linebreak FY19: \$850,836 (\$1,366,308).
\end{flushleft}
%\subsection{External Research Support: Current}
\subsection{\href{https://neurodata.io/about/funding/}{External Research Support: Current}}
\cventry{9/19 -- 8/22}
{NIH}%
{}
{Mueller (PI)}
{\emph{Accessible technologies for high-throughput, whole-brain reconstructions of molecularly characterized mammalian neurons P0}
The goal of this grant will be to develop scalable
and affordable cellular imaging and neuro-informatics tools,
running preliminary experiments to connect the transcriptome to
anatomy, in mice. Tools will be made available to researchers,
to help accelerate the creation of detailed maps at cell
resolution showing circuitry in whole brains.}
{JTV is responsible for all big data infrastructure and informatics.}
{}
\cventry{12/19 -- 11/23}
{DARPA GARD}%
{}
{Arora (PI)}
{\emph{Understanding and improving robust learning against adversarial attacks}.}
{JTV is responsible for theory, methods, and algorithms using decision forests.}
{}
\cventry{12/19 -- 11/23}
{NIH}%
{}
{Badea (PI)}
{\emph{Brain Networks in Mouse Models of Aging.}
The goal of this grant it to generate connectomes and RNA-seq transcriptomes to characterize and differentiate APOE mice as a model of aging.}
{JTV is responsible for all statistical analyses, particularly associated with connectomics.}
{}
\cventry{8/19 -- 5/24}
{NIH 1R01MH120482-01}%
{\$73,570}
{Satterthwaite (PI)}
{\emph{Reproducible imaging-based brain growth charts for psychiatry.}
This goal of this proposal will have provide a new data resource, yield reproducible growth charts of brain development, and delineate novel mechanisms regarding the developmental basis of psychopathology in youth.}
{JTV is responsible for all statistical analyses, particularly associated with connectomics.}
{}
\cventry{5/17 -- 4/20}
{NSF 1712947}%
{}
{Shen (PI)}
{\href{http://grantome.com/grant/NSF/DMS-1921310}%
{Multiscale Generalized Correlation: A Unified Distance-Based Correlation Measure for Dependence Discovery}
The goal of this proposal is to establish a unified methodology framework for statistical testing in high-dimensional, noisy, big data, through theoretical advancements, comprehensive simulations, and real data experiments}%
{JTV is responsible for working with the PI on all aspects of methods development and assessments, as well as all real data applications.}
{}
\cventry{7/17 -- 6/20}
{NIH 1R01DC016784-01}%
{}
{Ratnanather (PI)}
{\href{http://grantome.com/grant/NIH/R01-DC016784-02}%
{CRCNS US-German Res Prop: functional computational anatomy of the auditory cortex.}
The goal of this project is to create a robust computational framework for analyzing the cortical ribbon in a specific region: the auditory cortex}
{JTV is responsible for the big data aspects of this grant, including data sharing and open access properties.}
{}
\cventry{10/16 -- 9/20}%
{DARPA D3M FA8750-17-2-0112}%
{}%
{Priebe (PI)}
{\emph{What Would Tukey Do?}
The goal is to develop theory and methods for generating a discoverable archive of data modeling primitives and for automatically selecting model primitives and for composing selected primitives into complex modeling pipelines based on user-specified data and outcome(s) of interest}%
{JTV is responsible for connecting methods to real data applications, specifically in brain science.}
{}
\cventry{9/17 -- 8/22}
{NIH U19 1U19NS104653-01}%
{\$67,209 (\$110,055)}%
{Engert (PI)}
{\href{http://grantome.com/grant/NIH/U19-NS104653-02}%
{Sensorimotor processing, decision-making, and internal states: towards a realistic multiscale circuit model of the larval zebrafish brain.}
The general goal of the proposal is to generate a realistic multiscale circuit model of the larval zebrafish’s brain – the multiscale virtual fish (MSVF). The model will span spatial ranges from the nanoscale at the synaptic level, to local microcircuits to inter-area connectivity - and its ultimate purpose is to explain and simulate the quantitative and qualitative nature of behavioral output across various timescales}%
{JTV is the PI of the Data Core, and therefore responsible for all
aspects of data, including, storage, analysis, modeling, and
disseminating.\\
The above grant is the flagship NIH BRAIN Initiative granting mechanism. In addition to being the PI of the Data Core, I am the co-chair of the consortium of U19 Data Science Cores.}
\cventry{1/18 -- 12/19}
{Schmidt Sciences}%
{\$125,000}%
{Vogelstein (PI)}
{\emph{Connectome Coding at the Synaptic Scale.}
This project will study learning and plasticity at an unprecedented scale, revealing the dynamics of large populations of synapses comprising an entire local cortical circuit. No previously conducted experiment could answer the questions about the dynamics of large populations of synapses, which is crucial to understanding the learning process}%
{}
{}
\cventry{11/17 -- 10/21}
{DARPA L2M}%
{\$2,000,000}%
{Vogelstein (PI)}
{\emph{Lifelong Learning Forests.}
Our Lifelong Learning Forests (L2Fs) will learn continuously, selectively adapting to new environments and circumstances utilizing top-down feedback to impact low-level processing, with provable statistical guarantees, while maintaining computational tractability at scale. }%
{}
{}
\cventry{11/17 -- 10/21}
{DARPA L2M}%
{\$19,940}%
{Tolias (PI)}
{\emph{Continual Learning Across Synapses, Circuits, and Brain Areas.}
Our goal is to develop the pre-processing analysis pipeline for the imaging data collected in this project}%
{JTV is responsible for all informatics associated with data management, visualization, processing, and analysis starting in Phase II of the program.}
{}
\cventry{7/18 -- 6/21}
{NSF}%
{\$599,757}%
{Shulman (PI)}
{\href{http://grantome.com/grant/NSF/MCB-1807546}%
{SemiSynBio: Collaborative Research: YeastOns: Neural Networks Implemented in Communication Yeast Cells.}
Our goal is to provide neuroscience and machine learning expertise to guide the design of the computational learning capabilities of the system}%
{JTV is responsible for providing insight into both biological and artificial neural network architecture and function.}
{}
\cventry{7/17 -- 6/20}
{NSF, NeuroNex 16-569 Neural System Cluster 1707298}%
{\$400,000}
{Vogelstein (PI)}
{\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1707298}%
NeuroNex Innovation Award: Towards Automatic Analysis of Multi-Terabyte Cleared Brains.}%
{The goal of this project is to develop an end-to-end pipeline for
the analysis of big brain volume data in the cloud.\\
The above grant is the flagship NSF BRAIN Initiative granting
mechanism.}{}
\subsection{External Research Support: Completed}
\cventry{10/17 -- 9/18}
{Dog Star Technologies, 90074647}
{\$48,151 (\$78,849)}
{Vogelstein (PI)}
{Brain Ark}
{JTV is responsible for estimating the connectomes from four coyotes and four sea lions.}
{}
\cventry{1/17 -- 2/18}
{Kavli Foundation}
{\$50,000}
{Vogelstein (PI)}
{International Brain Station}
{JTV is responsible establishing the foundations of what could become an international brain station.}
{}
\cventry{1/17 -- 10/18}
{NSF EAGER}
{\$24,188}
{Burns (PI), ACI-1649880}
{\href{https://nsf.gov/awardsearch/showAward?AWD_ID=1649880&HistoricalAwards=false}%
{Brain Comp Infra: EAGER: BrainLab CI: Collaborative, Community Experiments with Data-Quality Controls through Continuous Integration}}
{JTV is responsible for integrating and applying this work in the context of brain science numerical experiments.}
{}
\cventry{4/16 -- 3/19}
{NSF 1637376}
{\$120,000}
{Vogelstein (PI)}
{%
A Scientific Planning Workshop for Coordinating Brain Research Around the Globe}
{JTV is responsible for organizing this series of meetings held at JHU, including the first ever international brain initiative workshop.}
{}
\cventry{5/15 -- 8/18}
{DARPA SIMPLEX N66001-15-C-4041}
{\$65,842 (\$106,665)}
{Vogelstein (PI)}
{\emph{From RAGs to Riches: Utilizing Richly Attributed Graphs to Reason from Heterogenous Data}.}
{}
{}
\cventry{9/14 -- 6/19}
{NIH Director's Transformative Research Award R01NS092474}
{\$116,838 (\$189,278)}
{Smith (PI)}
{\href{http://grantome.com/grant/NIH/R01-NS092474-01}%
{Synaptomes of Mouse and Man}}
{JTV is responsible for all statistical analyses of data.\\
The above award is part of the High-Risk, High-Reward Research program directly from the NIH Director's budget. It is the largest and most prestigious award given by NIH.}
\cventry{5/14 -- 2/16}
{DARPA (GRAPHS), DARPA-BAA-13-15}
{\$38,060 (\$61,658)}
{Burns (PI)}
{\emph{Scalable Brain Graph Analyses Using Big-Memory, High-IOPS Compute Architectures}.}
{JTV is responsible for motivating and applying methods development for brain graph data. }
{}
\cventry{3/13 -- 1/16}
{NIH/NSF (BIGDATA), 1R01DA036400}
{}
{Mitra (PI)}
{\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1649865}%
{Computational infrastructure for massive neuroscience image stacks}}
{JTV is responsible for computational infrastructure and statistical analysis.}
{}
\cventry{2/13 -- 9/15}{Endeavor Scientists Training Fellowship}{}{Child Mind Institute}{Vogelstein (PI)}{}
\cventry{9/12 -- 8/15}
{NIH/NIBIB (CRCNS), 1R01EB016411}
{\$42,190 \$52,979)}
{Burns (PI)}
{\href{http://grantome.com/grant/NIH/R01-EB016411-03}%
{Data Sharing: The EM Open Connectome Project}}
{JTV is responsible all aspects of this grant that relate to brain science (as compared to computer science).}
{}
\cventry{1/14 -- 12/14}
{Laboratory for Analytic Sciences}{}
{Harer (PI)}
{\emph{Data Readiness Level}}
{JTV is responsible for applications to brain science.}
{}
\cventry{1/12 -- 10/13}
{DARPA (XDATA), FA8750-12-C-0239}
{\$111,467 (\$165,477)}
{Andrews (PI)}
{\emph{Graph-Based Scalable Analytics for Big Data}.}
{JTV is responsible to acquiring and cleaning big brain network data.}
{}
\cventry{12/09 -- 1/13}
{NSF}{}
{RJ Vogelstein (PI)}
{\emph{National Center for Applied Neuroscience Project}.}
{JTV is responsbile for developing statistical connectomics methods.}
{}
\section{Service}
\subsection{Department Service}
\cventry{Winter '19}{Organizer}{Decision Forest Hackathon}{}{}{}
\cventry{Summer '19}{Organizer}{NeuroData Workshop}{\url{https://neurodata.devpost.com}}{Hackashop to train brain scientists in machine learning for big data ()$\sim$ 50 participants from around the country).}{}
\cventry{March '19}{Organizer}{Neuro Reproducibility Hackashop}{\url{https://brainx3.io/}}{Hackashop to train brain scientists in best practices in reproducible science, co-organized with two startups: Vathes, LLC and Gigantum ($\sim$ 50 participants)}{}
\cventry{Spring '18}{Organizer}{NeuroData Hackathon}{}{}{}
\cventry{Fall '17}{Organizer}{NeuroData Mini-Hackathon}{}{}{}
\cventry{Summer '17}{Organizer}{NeuroStorm}{\url{https://brainx2.io}}{Workshop bring together thought leaders from academia, national labs, industry, and non-profits around the world to take next steps towards accelerating brain science discovery in the cloud ($\sim$ 50 participants and 5 observers from funding institutions)}{}
\cventry{Winter '15}{Organizer}{Hack@NeuroData}{\url{http://hack.neurodata.io/}}{}{}
\subsection{University Service}
\cventry{2019}{Member}{Search Committee}{BME}{Neuroengineering, 2019}{}
\cventry{2019}{Member}{Search Committee}{BME}{Data Science, 2019}{}
\cventry{2018}{Member}{Search Committee}{BME}{Neuroengineering, 2018}{}
\cventry{Winter '17}{Faculty Superviser}{MedHacks}{\url{http://medhacks.org/}}{}{}
\cventry{Winter '16}{Faculty Superviser}{MedHacks}{\url{http://medhacks.org/}}{}{}
\cventry{Spring '16}{Organizer}{Global Brain Workshop}{\url{http://brainx.io}}{First ever international Brain Initiative workshop, bringing together leaders from around the world, covered by Nature and Science ($\sim$ 75 participants)}{}
\cventry{Winter '15}{Faculty Superviser}{MedHacks}{\url{http://medhacks.org/}}{}{}
\subsection{Professional Service}
\cventry{Fall '16}{Co-Organizer}{Brains and Bits: Neuroscience Meets Machine Learning, NIPS Workshop}{\url{http://www.stat.ucla.edu/~akfletcher/brainsbits_overview.html}}{}{}
\cventry{Fall '15}{Co-Organizer}{BigNeuro2015: Making Sense of Big Neural Data, NIPS Workshop}{\url{http://neurodata.io/bigneuro2015}}{}{}
\cventry{Fall '12}{Co-Organizer}{\href{https://openwiki.janelia.org/wiki/download/attachments/8687459/final+agenda+EM+Connectomics+100512.pdf}{Scaling up EM Connectomics Conference}}{}{The world's first connectomics workshop, now run annually alternating between Janelia Research and Max Plank locations ($\sim$ 80 participants)}{}
\section{Other Scholarly and Technical Output}
%\subsection{Patents}
\subsection{Boards}
\cventry{10/18 -- now}{Advisory Board}{\href{https://mind-x.io/}{Mind-X}}{}{}{}
\cventry{01/17 -- now}{Advisory Board}{\href{https://www.pivotalpath.com/}{PivotalPath}}{}{}{}
\subsection{Consultancy}
\cventry{2017}{Consultant}{\href{https://www.greenspringassociates.com}{Greenspring Associates}}{}{}{}
\cventry{2016}{Consultant}{Scanadu}{}{}{}
%\subsection{Other Roles in Companies}
\end{document}