Merge pull request #5 from rudolfjs/4-subsection-headers

ready to merge with main for v1.1.0

Author: rudolfjs

.changes/unreleased/Changed-20250831-214451.yaml

@@ -0,0 +1,5 @@
+## v1.1.0 - 2025-09-02
+### Changed
+* Re-run error on workflow corrected
+* Headers clearer in `notes/`
+* Cleanup on index files

.changes/v1.1.0.md

@@ -6,6 +6,12 @@ adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html),
 and is generated by [Changie](https://github.com/miniscruff/changie).
 
 
+## v1.1.0 - 2025-09-02
+### Changed
+* Re-run error on workflow corrected
+* Headers clearer in `notes/`
+* Cleanup on index files
+
 ## v1.0.0 - 2025-08-31
 ### Added
 * Initial structure

CHANGELOG.md

@@ -3,31 +3,3 @@ title: "About"
 description: "Background, research interests, and expertise"
 ---
 
-## Background
-
-I am a researcher in Information Technology with a PhD focusing on digital health and machine learning applications in healthcare. My research aims to bridge the gap between advanced machine learning techniques and practical healthcare solutions.
-
-## Research Interests
-
-- **Digital Health Technologies**: Development and implementation of digital solutions for healthcare delivery and management
-- **Machine Learning in Healthcare**: Application of ML algorithms for medical data analysis and prediction
-- **Healthcare Information Systems**: Integration and optimization of IT systems in healthcare settings
-
-## Education
-
-- PhD in Information Technology
-- [Previous degrees to be added]
-
-## Current Work
-
-I am currently focused on developing machine learning solutions for healthcare applications, with a particular emphasis on:
-
-- Predictive analytics in healthcare
-- Medical data processing and analysis
-- Healthcare system optimization
-
-## Contact
-
-Feel free to reach out for research collaborations or discussions about digital health and machine learning in healthcare.
-
-[Contact information and social links to be added]

content/about/_index.md

@@ -1,30 +1,4 @@
 ---
-title: "Notes"
+title: "Blog"
 description: "Technical insights, research notes, and discussions on digital health and ML"
 ---
-
-## Technical Notes
-
-Welcome to my technical notes where I share insights, tutorials, and discussions about:
-
-- Machine Learning in Healthcare
-- Digital Health Technologies
-- Technical Implementations
-- Research Notes
-- Code Tutorials
-
-### Categories
-
-- **Technical Tutorials**: Step-by-step guides and implementations
-- **Research Notes**: Insights from current research
-- **ML in Healthcare**: Practical applications and case studies
-- **Digital Health**: Industry trends and technologies
-- **Code Snippets**: Useful implementations and solutions
-
-### Recent Posts
-
-[Recent blog posts will be listed here automatically]
-
----
-
-Subscribe to the [RSS feed](/index.xml) to stay updated with new posts.

content/blog/_index.md

@@ -9,13 +9,13 @@ draft: false
 
 When [Podman Desktop](https://podman-desktop.io/) is installed on Windows, it creates a dedicated WSL distribution called `podman-machine-default` to run containers. This guide will allow you to configure a separate WSL distribution (e.g. `AlmaLinux-9`) to connect to and use that existing Podman machine, allowing you to run Podman commands from multiple WSL distributions while sharing the same container runtime.
 
-### Environment
+# Environment
 
 - Windows with WSL2 enabled
 - Podman Desktop installed with `podman-machine-default` running
 - AlmaLinux-9 WSL distribution installed
 
-### Step 1: Identify Podman Machine Mode
+## Step 1: Identify Podman Machine Mode
 
 From Windows PowerShell, check if your Podman machine is running in rootful or rootless mode:
 
@@ -25,23 +25,23 @@ podman system connection list
 
 Look for the connection marked as `Default = true`. If it ends with `-root`, you're using rootful mode.
 
-### Step 2: Start AlmaLinux-9 WSL Session
+## Step 2: Start AlmaLinux-9 WSL Session
 
 ```powershell
 wsl --distribution AlmaLinux-9
 ```
 
-### Step 3: Install Podman Remote Client
+## Step 3: Install Podman Remote Client
 
 Install the podman-remote package from AlmaLinux repositories:
 
 ```bash
 sudo dnf install -y podman-remote
 ```
 
-### Step 4: Configure Podman System Connection
+## Step 4: Configure Podman System Connection
 
-For rootful mode (most common):
+### For rootful mode (most common)
 
 ```bash
 podman system connection add \
@@ -50,7 +50,7 @@ podman system connection add \
   unix:///mnt/wsl/podman-sockets/podman-machine-default/podman-root.sock
 ```
 
-For rootless mode:
+### For rootless mode
 
 ```bash
 podman system connection add \
@@ -59,7 +59,7 @@ podman system connection add \
   unix:///mnt/wsl/podman-sockets/podman-machine-default/podman-user.sock
 ```
 
-### Step 5: Configure User Group Membership
+## Step 5: Configure User Group Membership
 
 For rootful Podman, add your user to the `wheel` group (GID 10):
 
@@ -77,7 +77,7 @@ Restart your AlmaLinux-9 session:
 wsl --distribution AlmaLinux-9
 ```
 
-### Step 6: Verify Configuration
+## Step 6: Verify Configuration
 
 Run these commands to verify the setup:
 
@@ -98,29 +98,32 @@ podman run quay.io/podman/hello
 podman ps -a
 ```
 
-### Troubleshooting
+## Troubleshooting
+
+### Permission Denied on Socket
 
-**Permission Denied on Socket:**
 ```bash
 ls -l /mnt/wsl/podman-sockets/podman-machine-default/podman-root.sock
 id -nG
 ```
 
-**Connection Refused:**
+### Connection Refused
+
 ```powershell
 # From Windows PowerShell
 podman machine list
 podman machine start podman-machine-default
 ```
 
-**Socket Not Found:**
+### Socket Not Found
+
 ```powershell
 # From Windows PowerShell - restart WSL
 wsl --shutdown
 wsl --distribution AlmaLinux-9
 ```
 
-### Notes
+## Notes
 
 1. **Architecture:** AlmaLinux-9 acts as a Podman client only, not running a separate Podman daemon
 2. **Shared Runtime:** All containers are managed by the `podman-machine-default` VM, visible from both Windows and AlmaLinux-9

content/notes/posts/access-podman-another-wsl.md

@@ -2,51 +2,3 @@
 title: "Projects"
 description: "Technical projects and implementations in healthcare ML"
 ---
-
-## Research Projects
-
-This section highlights my technical projects in healthcare machine learning and digital health. Each project includes implementation details, methodologies, and where applicable, links to code repositories.
-
-### Current Projects
-
-[Current projects will be listed here with:
-- Project descriptions
-- Technical details
-- Implementation approaches
-- Results and findings
-- Links to code repositories]
-
-### Completed Projects
-
-[Completed projects will be listed here with:
-- Project outcomes
-- Technical implementations
-- Lessons learned
-- Code repositories]
-
----
-
-## Technical Skills & Tools
-
-### Programming Languages
-- Python
-- R
-- Other relevant languages
-
-### Machine Learning Frameworks
-- TensorFlow
-- PyTorch
-- Scikit-learn
-
-### Healthcare Data Tools
-- FHIR
-- HL7
-- Other healthcare standards
-
----
-
-## Code Examples
-
-This section will feature code snippets and examples from various projects, demonstrating implementation approaches in healthcare ML.
-
-[Code examples will be added here]

content/projects/_index.md

@@ -3,37 +3,3 @@ title: "Publications"
 description: "Research publications in digital health and machine learning"
 ---
 
-## Research Publications
-
-This page lists my academic publications in the fields of digital health, machine learning, and healthcare information technology.
-
-### Journal Articles
-
-[Publications will be listed here]
-
-### Conference Papers
-
-[Conference papers will be listed here]
-
-### Preprints
-
-[Preprints will be listed here]
-
----
-
-## Citation Metrics
-
-[Citation metrics and research impact to be added]
-
----
-
-## Research Collaboration
-
-Interested in collaboration? Feel free to reach out to discuss potential research opportunities in:
-
-- Machine Learning in Healthcare
-- Digital Health Solutions
-- Healthcare Data Analytics
-- Medical Information Systems
-
-[Contact information for research collaboration to be added]

content/publications/_index.md

@@ -233,6 +233,68 @@
         }
     </script>
 
+    <!-- Custom styles for content headers -->
+    <style>
+        /* Direct styling for headers within content div to ensure proper hierarchy */
+        .content h1 {
+            font-size: 2rem;
+            font-weight: 700;
+            color: #f3f4f6;
+            margin-top: 2rem;
+            margin-bottom: 1.5rem;
+            line-height: 1.2;
+        }
+        
+        .content h2 {
+            font-size: 1.5rem;
+            font-weight: 600;
+            color: #e5e7eb;
+            margin-top: 1.75rem;
+            margin-bottom: 1rem;
+            line-height: 1.3;
+        }
+        
+        .content h3 {
+            font-size: 1.25rem;
+            font-weight: 600;
+            color: #e5e7eb;
+            margin-top: 1.5rem;
+            margin-bottom: 0.75rem;
+            line-height: 1.3;
+        }
+        
+        .content h4 {
+            font-size: 1.125rem;
+            font-weight: 600;
+            color: #d1d5db;
+            margin-top: 1.25rem;
+            margin-bottom: 0.5rem;
+        }
+        
+        .content h5 {
+            font-size: 1rem;
+            font-weight: 600;
+            color: #d1d5db;
+            margin-top: 1rem;
+            margin-bottom: 0.5rem;
+        }
+        
+        .content h6 {
+            font-size: 0.875rem;
+            font-weight: 600;
+            color: #d1d5db;
+            margin-top: 1rem;
+            margin-bottom: 0.5rem;
+        }
+        
+        /* Ensure first header doesn't have too much top margin */
+        .content > h1:first-child,
+        .content > h2:first-child,
+        .content > h3:first-child {
+            margin-top: 0;
+        }
+    </style>
+    
     <!-- KaTeX for math rendering -->
     {{ if .Site.Params.math }}
     <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/[email protected]/dist/katex.min.css">

themes/minimal-research/layouts/_default/baseof.html

@@ -40,7 +40,7 @@ <h1 class="text-4xl font-bold mb-4 text-white">{{ .Title }}</h1>
         {{ end }}
     </header>
 
-    <div class="content mt-8 space-y-6">
+    <div class="content prose dark:prose-invert max-w-none mt-8 space-y-6">
         {{ .Content }}
     </div>