Test Data calc_median.R error

[apdavid]

I am running ReadZS on the test data and I get the following error:

Process: NFCORE_READZS:READZS:SIGNIF_WINDOWS:CALC_MEDIAN (small_test_data_chr21)

The command executed:

  calc_median.R \
    small_test_data_chr21.zscore \
    'compartment, tissue' \
    10 \
    5 \
    100 \
    small_test_data_chr21_medians_100_permutations_min_10_cellsPerGeneOnt_5_ctsPerCell.txt \
    small_test_data_chr21_signif_medians_100_permutations_min_10_cellsPerGeneOnt_5_ctsPerCell.txt

The error message:

  Error in `:=`(has_ann, ifelse((ontology %like% "ANNOTATE_NA"), 0, 1)) : 
    Check that is.data.table(DT) == TRUE. Otherwise, := and `:=`(...) are defined for use in j, once only and in particular ways. See help(":=").
  Calls: [ -> [.data.frame -> :=