diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 8c1edc01..0bdfa010 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -57,7 +57,7 @@ jobs:
         cmake-version: ["3.15.x"]
 
         include:
-          - python-version: "pypy-3.8"
+          - python-version: "pypy-3.9"
             runs-on: windows-2022
             cmake-version: "3.21.x"
           - python-version: "3.11"
@@ -85,7 +85,7 @@ jobs:
             runs-on: ubuntu-latest
             cmake-version: "3.26.x"
           - python-version: "3.8"
-            runs-on: windows-2019
+            runs-on: windows-2022
             cmake-version: "3.24.x"
           - python-version: "3.12"
             runs-on: windows-latest
@@ -121,21 +121,13 @@ jobs:
             ${{ matrix.python-version == '3.13' && runner.os == 'Windows' }}
 
       - uses: astral-sh/setup-uv@v6
-        if: matrix.python-version != 'pypy-3.8'
 
       - name: Install package (uv)
-        if: matrix.python-version != 'pypy-3.8'
         run:
           uv pip install
           -e.[test,test-meta,test-numpy,test-schema,test-hatchling,wheels,cov,wheel-free-setuptools]
           --system
 
-      - name: Install package (pip)
-        if: matrix.python-version == 'pypy-3.8'
-        run:
-          pip install
-          -e.[test,test-meta,test-numpy,test-schema,wheels,cov,wheel-free-setuptools]
-
       - name: Test package
         if: "!contains(matrix.python_version, 'pypy')"
         run: >-
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index efc78b72..473cc04a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -25,7 +25,7 @@ repos:
         exclude: "^tests"
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.11.12
+    rev: v0.12.2
     hooks:
       - id: ruff
         args: ["--fix", "--show-fixes"]
@@ -51,7 +51,7 @@ repos:
         exclude: ^src/scikit_build_core/resources/find_python
 
   - repo: https://github.com/rbubley/mirrors-prettier
-    rev: "v3.5.3"
+    rev: "v3.6.2"
     hooks:
       - id: prettier
         types_or: [yaml, markdown, html, css, scss, javascript, json]
@@ -59,7 +59,7 @@ repos:
         exclude: "^tests|src/scikit_build_core/resources/scikit-build.schema.json|^docs/projects.md"
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.16.0
+    rev: v1.16.1
     hooks:
       - id: mypy
         exclude: |
@@ -131,12 +131,12 @@ repos:
         additional_dependencies: ["cogapp>=3.5"]
 
   - repo: https://github.com/henryiii/validate-pyproject-schema-store
-    rev: 2025.05.12
+    rev: 2025.06.23
     hooks:
       - id: validate-pyproject
 
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.33.0
+    rev: 0.33.2
     hooks:
       - id: check-dependabot
       - id: check-github-workflows
diff --git a/pyproject.toml b/pyproject.toml
index 9441aae6..ddb9543e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -323,6 +323,7 @@ known-local-folder = ["pathutils"]
 "noxfile.py" = ["T20", "TID251"]
 "src/scikit_build_core/resources/*.py" = ["PTH", "ARG002", "FBT", "TID251"]
 "src/scikit_build_core/_compat/**.py" = ["TID251"]
+"src/scikit_build_core/settings/**.py" = ["FBT001"]
 "tests/conftest.py" = ["TID251"]
 "tests/packages/**.py" = ["TID251"]
 "docs/conf.py" = ["TID251"]
diff --git a/tests/packages/importlib_editable/pkg/pmod_a.py b/tests/packages/importlib_editable/pkg/pmod_a.py
index c84f2b71..a723e7d5 100644
--- a/tests/packages/importlib_editable/pkg/pmod_a.py
+++ b/tests/packages/importlib_editable/pkg/pmod_a.py
@@ -1,4 +1,4 @@
-# ruff: noqa: I001, F401
+# ruff: noqa: F401
 # mypy: ignore-errors
 
 # Level one import sibling
diff --git a/tests/packages/importlib_editable/pkg/sub_a/pmod_b.py b/tests/packages/importlib_editable/pkg/sub_a/pmod_b.py
index d1e1290a..55f4d454 100644
--- a/tests/packages/importlib_editable/pkg/sub_a/pmod_b.py
+++ b/tests/packages/importlib_editable/pkg/sub_a/pmod_b.py
@@ -1,4 +1,4 @@
-# ruff: noqa: I001, F401
+# ruff: noqa: F401
 # mypy: ignore-errors
 
 # Level two import sibling
diff --git a/tests/packages/importlib_editable/pkg/sub_b/pmod_c.py b/tests/packages/importlib_editable/pkg/sub_b/pmod_c.py
index ca62c140..3fed3b13 100644
--- a/tests/packages/importlib_editable/pkg/sub_b/pmod_c.py
+++ b/tests/packages/importlib_editable/pkg/sub_b/pmod_c.py
@@ -1,4 +1,4 @@
-# ruff: noqa: I001, F401
+# ruff: noqa: F401
 # mypy: ignore-errors
 
 # Level two import sibling
diff --git a/tests/packages/importlib_editable/pkg/sub_b/sub_c/pmod_d.py b/tests/packages/importlib_editable/pkg/sub_b/sub_c/pmod_d.py
index ea36e2de..36da2f06 100644
--- a/tests/packages/importlib_editable/pkg/sub_b/sub_c/pmod_d.py
+++ b/tests/packages/importlib_editable/pkg/sub_b/sub_c/pmod_d.py
@@ -1,4 +1,4 @@
-# ruff: noqa: I001, F401
+# ruff: noqa: F401
 # mypy: ignore-errors
 
 # Level three import sibling
diff --git a/tests/packages/importlib_editable/pkg/sub_b/sub_d/pmod_e.py b/tests/packages/importlib_editable/pkg/sub_b/sub_d/pmod_e.py
index ab44cd5d..4dbffb5a 100644
--- a/tests/packages/importlib_editable/pkg/sub_b/sub_d/pmod_e.py
+++ b/tests/packages/importlib_editable/pkg/sub_b/sub_d/pmod_e.py
@@ -1,4 +1,4 @@
-# ruff: noqa: I001, F401
+# ruff: noqa: F401
 # mypy: ignore-errors
 
 # Level three import sibling
diff --git a/tests/packages/importlib_editable/pmod.py b/tests/packages/importlib_editable/pmod.py
index ee44ae39..38038ce0 100644
--- a/tests/packages/importlib_editable/pmod.py
+++ b/tests/packages/importlib_editable/pmod.py
@@ -1,4 +1,4 @@
-# ruff: noqa: I001, F401
+# ruff: noqa: F401
 # mypy: ignore-errors
 
 # Level zero import global sibling
diff --git a/tests/test_skbuild_settings.py b/tests/test_skbuild_settings.py
index 2aff167a..4f92b62d 100644
--- a/tests/test_skbuild_settings.py
+++ b/tests/test_skbuild_settings.py
@@ -1,5 +1,4 @@
 # Comparison with empty strings okay for symmetry
-# ruff: noqa: PLC1901
 
 from __future__ import annotations