commit2 fails to converge?

[yizhwan]

Hello,

I am running Connectoflow for a sample of tumour subjects on Ubuntu 22x04 on a 20 core intel i9 CPU with default settings via Docker, when it gets the Commit2 stage, Commit2 is taking a very long time to run (stuck at 80% at more than 12 h) without any error messages

My data is multishell and I have successfully run Tractoflow prior to this, could this be solved by increasing the NBR_ITR setting?

I have also attached a an example copy of a subject's bvec and bval files

example_bvec.txt

example_bval.txt

My comand is as follows:

NXF_VER=22.10.4 nextflow
run "/input/preproc/ses-1/Connectflow/connectoflow-master/main.nf" -with-docker scilus/scilus:1.2.1_connectoflow-1.1.0 --output_dir "${moving_dir}/input/preproc/ses-${Sessionnum}/Connectflow/output" -profile fully_reproducible --use_commit2 --in_peaks "/input/preproc/ses-${sub_number}/Connectflow/input/S${Sessionnum}/peaks.nii.gz" --input "input/preproc/ses-${Sessionnum}/Connectflow/input" --template "${template_image}" --labels_list "${labels_file}"

Thanks!