Nextflow version should be specified in the README #30
Description
Launching the pipeline with a newer (~24) version of nextflow gives a cryptic error wrt an unknown operator. This is because the pipeline is still using DSL1. Nextflow versions >22.10 do not support DSL1.
Nextflow 24.10.5 is available - Please consider updating your version to it
N E X T F L O W ~ version 24.10.4
Launching `main.nf` [lonely_elion] DSL2 - revision: 5af1b2a8ab
SCIL RecobundlesX pipeline
==========================
Start time: 2025-04-19T07:17:35.013932394-04:00
[Git Info]
null - null [null]
Options
=======
[Atlas]
Atlas Directory: false
[Recobundles options]
Minimal Vote Percentage: 0.1
Random Seed: 0
Outlier Removal Alpha: 0.5
Run Average Bundles: false
Input: /home/local/USHERBROOKE/thea1603/data/experiments/tracktolearn/default/testset
ERROR ~ No signature of method: groovyx.gpars.dataflow.DataflowBroadcast.into() is applicable for argument types: (Script_8ea0a33419eda45d$_runScript_closure3) values: [Script_8ea0a334
19eda45d$_runScript_closure3@16681017]
Possible solutions: any(), find(), bind(java.lang.Object), any(groovy.lang.Closure), find(groovy.lang.Closure), is(java.lang.Object)
-- Check script 'main.nf' at line: 60 or see '.nextflow.log' file for more details export NXF_DEFAULT_DSL=1
thea1603@dinf-0051-28b:~/workspace/rbx_flow$ nextflow run main.nf -with-docker scilus/scilus:latest --input ~/data/experiments/tracktolearn/default/testset
Nextflow 24.10.5 is available - Please consider updating your version to it
N E X T F L O W ~ version 24.10.4
Nextflow DSL1 is no longer supported — Update your script to DSL2, or use Nextflow 22.10.x or earlier