scilpy - non RAS stride

[arnaudbore]

Do not start this before the next meeting.
Next meeting: Tuesday 13th, 1pm

Everything should be based on the branch 3.0.x

Working prototype test with stride [-1,2,3,4]

To be continued:

• scil_aodf_metrics.py: Computes metrics from asymmetric ODFs. @CHrlS98
• scil_bingham_metrics.py: Computes metrics from Bingham distribution fits. @CHrlS98
• scil_btensor_metrics.py: Computes metrics using the DIVIDE method with b-tensor encodings. @karanphil
• scil_dki_metrics.py: Computes Diffusion Kurtosis Imaging (DKI) metrics. @arnaudbore
• scil_dti_metrics.py: Computes Diffusion Tensor Imaging (DTI) metrics. @arnaudbore
• scil_dwi_to_sh.py: Computes SH coefficients from raw DWI signal. @arnaudbore
• scil_fodf_to_bingham.py: Fits a Bingham distribution to fODF lobes. @CHrlS98
• scil_gradients_apply_transform.py: Transforms b-vectors using an affine/rigid transformation. @karanphil
• scil_gradients_modify_axes.py: Flips or swaps axes of the gradient sampling matrix. @karanphil
• scil_mrds_metrics.py: Computes metrics for each Multi-Resolution Discrete-Search (MRDS) solution. @arnaudbore
• scil_qball_metrics.py: Computes Constant Solid Angle (CSA) or Analytical Q-ball model metrics. @arnaudbore
• scil_sh_convert.py: Converts SH files between different bases. @arnaudbore
• scil_sh_fusion.py: Merges a list of Spherical Harmonics files. @arnaudbore
• scil_sh_to_aodf.py: Estimates asymmetric ODFs (aODFs) from a spherical harmonics image. @CHrlS98
• scil_sh_to_rish.py: Computes Rotationally Invariant Spherical Harmonics (RISH) features. @arnaudbore
• scil_sh_to_sf.py: Samples SF values from a Spherical Harmonics signal. @arnaudbore
• scil_tracking_local_dev.py: Local streamline HARDI tractography. @gabknight
• scil_viz_bingham_fit.py: Visualizes a 2D slice of a Bingham volume. @CHrlS98
• scil_viz_dti_screenshot.py: Registers DWI to a template for screenshots. @arnaudbore
• scil_viz_gradients_screenshot.py: Visualizes directions on a sphere. @arnaudbore
  ...