From 908c05a97e8ebbfde583b0ee78f861a41d21bfbc Mon Sep 17 00:00:00 2001 From: laca6352 Date: Thu, 15 Jan 2026 22:08:43 -0500 Subject: [PATCH 01/11] Add new left ROIs --- .../new_ROIs_left/ VTTT_Controlat_OSandIS_1.bdo | 9 +++++++++ .../new_ROIs_left/ VTTT_Controlat_OSandIS_2.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Controlat_1.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Controlat_2.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Controlat_3.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Controlat_4.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_1.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_2.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_3.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_1.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_2.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_3.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_4.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_5.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_6.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_7.bdo | 9 +++++++++ .../MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_8.bdo | 9 +++++++++ 17 files changed, 153 insertions(+) create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_1.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_2.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_1.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_2.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_3.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_4.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_1.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_2.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_3.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_1.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_2.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_3.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_4.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_5.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_6.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_7.bdo create mode 100644 ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_8.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_1.bdo new file mode 100644 index 0000000..bbc7149 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_2.bdo new file mode 100644 index 0000000..6becd1f --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_1.bdo new file mode 100644 index 0000000..d5648c9 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_2.bdo new file mode 100644 index 0000000..c4c3900 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_3.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_3.bdo new file mode 100644 index 0000000..5d4a41c --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_3.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_4.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_4.bdo new file mode 100644 index 0000000..0120a3c --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_4.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_1.bdo new file mode 100644 index 0000000..efdc7ef --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_2.bdo new file mode 100644 index 0000000..c27979e --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_3.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_3.bdo new file mode 100644 index 0000000..69d1b98 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_3.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_1.bdo new file mode 100644 index 0000000..fabfd30 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_2.bdo new file mode 100644 index 0000000..67f00ef --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_3.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_3.bdo new file mode 100644 index 0000000..5a261b7 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_3.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_4.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_4.bdo new file mode 100644 index 0000000..53cbc7c --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_4.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_5.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_5.bdo new file mode 100644 index 0000000..e9be78c --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_5.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_6.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_6.bdo new file mode 100644 index 0000000..4482d68 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_6.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_7.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_7.bdo new file mode 100644 index 0000000..02faeed --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_7.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_8.bdo b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_8.bdo new file mode 100644 index 0000000..61ea6d0 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_8.bdo @@ -0,0 +1,9 @@ + + + + + + + + + From 75e860aa4ddbaa79c75693b581b29884d0ec3cc7 Mon Sep 17 00:00:00 2001 From: laca6352 Date: Thu, 15 Jan 2026 22:12:00 -0500 Subject: [PATCH 02/11] Add new right ROIs --- .../new_ROIs_right/ VTTT_Controlat_OSandIS_1.bdo | 9 +++++++++ .../new_ROIs_right/ VTTT_Controlat_OSandIS_2.bdo | 9 +++++++++ .../MNI/from_right/new_ROIs_right/DTTT_Controlat_1.bdo | 9 +++++++++ .../MNI/from_right/new_ROIs_right/DTTT_Controlat_2.bdo | 9 +++++++++ .../MNI/from_right/new_ROIs_right/DTTT_Controlat_3.bdo | 9 +++++++++ .../MNI/from_right/new_ROIs_right/DTTT_Controlat_4.bdo | 9 +++++++++ .../MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_1.bdo | 9 +++++++++ .../MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_2.bdo | 9 +++++++++ .../MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_3.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_1.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_2.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_3.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_4.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_5.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_6.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_7.bdo | 9 +++++++++ .../from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_8.bdo | 9 +++++++++ 17 files changed, 153 insertions(+) create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_1.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_2.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_1.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_2.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_3.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_4.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_1.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_2.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_3.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_1.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_2.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_3.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_4.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_5.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_6.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_7.bdo create mode 100644 ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_8.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_1.bdo new file mode 100644 index 0000000..0e6b5c7 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_2.bdo new file mode 100644 index 0000000..7671fe2 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_1.bdo new file mode 100644 index 0000000..abeb8bd --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_2.bdo new file mode 100644 index 0000000..cdca61c --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_3.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_3.bdo new file mode 100644 index 0000000..827c260 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_3.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_4.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_4.bdo new file mode 100644 index 0000000..480308d --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_4.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_1.bdo new file mode 100644 index 0000000..54eb273 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_2.bdo new file mode 100644 index 0000000..4d63d3a --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_3.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_3.bdo new file mode 100644 index 0000000..36fa8a6 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_3.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_1.bdo new file mode 100644 index 0000000..4c4b7a4 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_2.bdo new file mode 100644 index 0000000..d4f1c5d --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_3.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_3.bdo new file mode 100644 index 0000000..c68c84d --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_3.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_4.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_4.bdo new file mode 100644 index 0000000..54dca32 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_4.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_5.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_5.bdo new file mode 100644 index 0000000..ce041af --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_5.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_6.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_6.bdo new file mode 100644 index 0000000..01fad24 --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_6.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_7.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_7.bdo new file mode 100644 index 0000000..636001a --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_7.bdo @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_8.bdo b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_8.bdo new file mode 100644 index 0000000..d69d97d --- /dev/null +++ b/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_8.bdo @@ -0,0 +1,9 @@ + + + + + + + + + From daf0be2b96a96d0cb1a17b067e496f6196766d89 Mon Sep 17 00:00:00 2001 From: laca6352 Date: Thu, 15 Jan 2026 22:17:25 -0500 Subject: [PATCH 03/11] Renommer --- .../{new_ROIs_left => new_ROIs}/ VTTT_Controlat_OSandIS_1.bdo | 0 .../{new_ROIs_left => new_ROIs}/ VTTT_Controlat_OSandIS_2.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_1.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_2.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_3.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_4.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_CS_1.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_CS_2.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_CS_3.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_1.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_2.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_3.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_4.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_5.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_6.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_7.bdo | 0 .../from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_8.bdo | 0 17 files changed, 0 insertions(+), 0 deletions(-) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/ VTTT_Controlat_OSandIS_1.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/ VTTT_Controlat_OSandIS_2.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_1.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_2.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_3.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Controlat_4.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_CS_1.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_CS_2.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_CS_3.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_1.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_2.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_3.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_4.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_5.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_6.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_7.bdo (100%) rename ROIs_clean/MNI/from_left/{new_ROIs_left => new_ROIs}/DTTT_Ipsilat_dPSN_8.bdo (100%) diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_1.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/ VTTT_Controlat_OSandIS_2.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_1.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_1.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_2.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_2.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_3.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_3.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_3.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_3.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_4.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_4.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Controlat_4.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Controlat_4.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_CS_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_1.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_CS_1.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_CS_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_2.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_CS_2.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_3.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_CS_3.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_CS_3.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_CS_3.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_1.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_2.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_2.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_3.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_3.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_3.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_3.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_4.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_4.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_4.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_4.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_5.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_5.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_5.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_5.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_6.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_6.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_6.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_6.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_7.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_7.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_7.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_7.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_8.bdo b/ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_8.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs_left/DTTT_Ipsilat_dPSN_8.bdo rename to ROIs_clean/MNI/from_left/new_ROIs/DTTT_Ipsilat_dPSN_8.bdo From 90f899ae9af8d1d48d388c0677140a65a29648d4 Mon Sep 17 00:00:00 2001 From: laca6352 Date: Thu, 15 Jan 2026 22:18:47 -0500 Subject: [PATCH 04/11] Renommer R --- .../{new_ROIs_right => new_ROIs}/ VTTT_Controlat_OSandIS_1.bdo | 0 .../{new_ROIs_right => new_ROIs}/ VTTT_Controlat_OSandIS_2.bdo | 0 .../from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_1.bdo | 0 .../from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_2.bdo | 0 .../from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_3.bdo | 0 .../from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_4.bdo | 0 .../from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_CS_1.bdo | 0 .../from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_CS_2.bdo | 0 .../from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_CS_3.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_1.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_2.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_3.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_4.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_5.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_6.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_7.bdo | 0 .../{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_8.bdo | 0 17 files changed, 0 insertions(+), 0 deletions(-) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/ VTTT_Controlat_OSandIS_1.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/ VTTT_Controlat_OSandIS_2.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_1.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_2.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_3.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Controlat_4.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_CS_1.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_CS_2.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_CS_3.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_1.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_2.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_3.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_4.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_5.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_6.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_7.bdo (100%) rename ROIs_clean/MNI/from_right/{new_ROIs_right => new_ROIs}/DTTT_Ipsilat_dPSN_8.bdo (100%) diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_1.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/ VTTT_Controlat_OSandIS_2.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_1.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_1.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_2.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_2.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_3.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_3.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_3.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_3.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_4.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_4.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Controlat_4.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Controlat_4.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_CS_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_1.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_CS_1.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_CS_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_2.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_CS_2.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_3.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_CS_3.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_CS_3.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_CS_3.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_1.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_2.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_2.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_3.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_3.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_3.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_3.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_4.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_4.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_4.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_4.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_5.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_5.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_5.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_5.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_6.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_6.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_6.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_6.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_7.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_7.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_7.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_7.bdo diff --git a/ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_8.bdo b/ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_8.bdo similarity index 100% rename from ROIs_clean/MNI/from_right/new_ROIs_right/DTTT_Ipsilat_dPSN_8.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/DTTT_Ipsilat_dPSN_8.bdo From 6cdeaa0d974b419130a146c7e256ae447b84838e Mon Sep 17 00:00:00 2001 From: alachancesc Date: Thu, 15 Jan 2026 22:31:29 -0500 Subject: [PATCH 05/11] new ROIs added to the code left and right --- trigeminal_second_order.sh | 50 ++++++++++++++++++++++++++++++-------- 1 file changed, 40 insertions(+), 10 deletions(-) diff --git a/trigeminal_second_order.sh b/trigeminal_second_order.sh index 6b241da..eab5f0e 100755 --- a/trigeminal_second_order.sh +++ b/trigeminal_second_order.sh @@ -26,7 +26,8 @@ while getopts "s:m:o:g:" args; do g) g=${OPTARG};; *) usage;; esac -done +donegit push origin Antoine_ROIs_PR_3 + shift $((OPTIND-1)) if [ -z "${s}" ] || [ -z "${m}" ] || [ -z "${o}" ]; then @@ -87,7 +88,10 @@ do orig_rois_dir=${out_dir}/${nsub}/orig_space/rois mni_rois_dir=${out_dir}/${nsub}/mni_space/rois - orig_tracking_dir=${out_dir}/${nsub}/orig_space/tracking_second_order + orig_tracking_dir=${out_dir}/${nsub}/orig_space/tracking_second_ordergit push origin Antoine_ROIs_PR_3 +git push origin Antoine_ROIs_PR_3 +git push origin Antoine_ROIs_PR_3 + mni_tracking_dir_first_order=${out_dir}/${nsub}/mni_space/tracking_first_order mni_tracking_dir_second_order=${out_dir}/${nsub}/mni_space/tracking_second_order @@ -126,6 +130,9 @@ do scil_labels_combine ${orig_rois_dir}/${nsub}_left_thalamus_orig.nii.gz \ --volume_ids ${orig_rois_dir}/${nsub}_aparc.DKTatlas+aseg_orig.nii.gz ${Left_Thalamus[*]} --merge_groups -f +git push origin Antoine_ROIs_PR_3 +git push origin Antoine_ROIs_PR_3 +git push origin Antoine_ROIs_PR_3 scil_labels_combine ${mni_rois_dir}/${nsub}_left_thalamus_mni.nii.gz \ --volume_ids ${mni_rois_dir}/${nsub}_aparc.DKTatlas+aseg_mni.nii.gz ${Left_Thalamus[*]} --merge_groups -f @@ -140,7 +147,7 @@ do ${orig_rois_dir}/${nsub}_${nside}_spinal_density_second_order_seed_orig.nii.gz \ ${orig_rois_dir}/${nsub}_wm_mask_${fa_threshold}_orig.nii.gz \ ${orig_tracking_dir}/orig/${nsub}_${nside}_from_spinal_track_npv1000.trk \ - --npv ${npv_from_spinal_track_long} \ + --npv ${npv_from_spinal_track_long} \--bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ -v -f ${gpu} # Tracking from Spinal bundle - npv 100 @@ -160,7 +167,9 @@ do ${orig_rois_dir}/${nsub}_${nside}_thalamus_orig.nii.gz \ ${orig_rois_dir}/${nsub}_wm_mask_${fa_threshold}_orig.nii.gz\ ${orig_tracking_dir}/orig/${nsub}_${nside}_from_thalamus_npv500.trk \ - --npv ${npv_from_thalamus_track} \ + --npv ${npv_from_thalamus_track} \git push origin Antoine_ROIs_PR_3 +git push origin Antoine_ROIs_PR_3 + -v -f ${gpu} done @@ -249,7 +258,7 @@ do ${out_dir}/mni_space/tracking_first_order/final/all_${nside}_remaining_cp_density_mni.nii.gz \ ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_mni.nii.gz \ --data_type uint8 -f - scil_labels_from_mask ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_mni.nii.gz \ + scil_labels_from_mask ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_mni.nii.gz \--bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_labels_mni.nii.gz \ -f done @@ -279,7 +288,11 @@ do --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_EXC_CaudalMedulla_Controlat.nii.gz 'any' 'exclude' \ --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_INC_VTT_Area.nii.gz 'any' 'include' \ --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_EXC_Pons_Ipsilat.nii.gz 'any' 'exclude' \ - --drawn_roi ${mni_dir}/MNI/cs_plaque.nii.gz 'any' 'exclude' -f + --drawn_roi ${mni_dir}/MNI/cs_plaque.nii.gz 'any' 'exclude'\ + --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_INC_VTT_Area.nii.gz 'any' 'include'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/VTTT_Controlat_OSandIS_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/VTTT_Controlat_OSandIS_2.bdo 'any' 'exclude' -f + ## vPSN ## VPM @@ -311,7 +324,11 @@ do --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/VTTT_Controlat_EXC_Ventral_Brainstem.nii.gz 'any' 'exclude' \ --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/DTTT_Controlat_INC_CaudalMedulla_Ipsilat.nii.gz 'any' 'include' \ --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/DTTT_Controlat_INC_Medulla_Controlat.nii.gz 'any' 'include' \ - --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/DTTT_Controlat_EXC_Midbrain_Ipsilat.nii.gz 'any' 'exclude' -f + --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/DTTT_Controlat_EXC_Midbrain_Ipsilat.nii.gz 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_2.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_3.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_4.bdo 'any' 'exclude' -f echo "|------------- 3.3) ${nside} - DTTT (ipsilateral) - dPSN and CS -------------|" ## CS @@ -322,15 +339,28 @@ do --drawn_roi ${mni_rois_dir}/${nsub}_${nside}_spinal_density_second_order_seed_mni.nii.gz 'either_end' 'include' \ --drawn_roi ${mni_rois_dir}/${nsub}_${nside}_VPM_mni.nii.gz 'any' 'include' \ --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_EXC_Ventral_Brainstem.nii.gz 'any' 'exclude' \ - --drawn_roi ${mni_dir}/MNI/midsagittal_plane.nii.gz 'any' 'exclude' -f - + --drawn_roi ${mni_dir}/MNI/midsagittal_plane.nii.gz 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_2.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_3.bdo 'any' 'exclude' -f + ## dPSN ## VPM/Thalamus scil_tractogram_filter_by_roi \ ${mni_tracking_dir_second_order}/orig/${nsub}_${nside}_from_spinal_track_npv1000.trk \ ${mni_tracking_dir_second_order}/filtered/${nsub}_from_${nside}_DTTT_Ipsilat_dPSN.trk \ --drawn_roi ${mni_rois_dir}/${nsub}_${nside}_VPM_mni.nii.gz 'any' 'include' \ - --drawn_roi ${out_dir}/mni_space/tracking_first_order/final/all_${nside}_remaining_cp_density_mni.nii.gz 'either_end' 'include' -f + --drawn_roi ${out_dir}/mni_space/tracking_first_order/final/all_${nside}_remaining_cp_density_mni.nii.gz 'either_end' 'include'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_2.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_3.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_4.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_5.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_6.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_7.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_8.bdo 'any' 'exclude' -f + + done echo "|------------- 3) Done -------------|" echo "" From 03f2fd229ea060a4d1ae3031ee550e9ae5389e8c Mon Sep 17 00:00:00 2001 From: alachancesc Date: Fri, 16 Jan 2026 08:11:46 -0500 Subject: [PATCH 06/11] Remove unnecessary git push commands from script --- trigeminal_second_order.sh | 18 +++++++----------- 1 file changed, 7 insertions(+), 11 deletions(-) diff --git a/trigeminal_second_order.sh b/trigeminal_second_order.sh index eab5f0e..a18cd4b 100755 --- a/trigeminal_second_order.sh +++ b/trigeminal_second_order.sh @@ -26,7 +26,7 @@ while getopts "s:m:o:g:" args; do g) g=${OPTARG};; *) usage;; esac -donegit push origin Antoine_ROIs_PR_3 +done shift $((OPTIND-1)) @@ -88,9 +88,7 @@ do orig_rois_dir=${out_dir}/${nsub}/orig_space/rois mni_rois_dir=${out_dir}/${nsub}/mni_space/rois - orig_tracking_dir=${out_dir}/${nsub}/orig_space/tracking_second_ordergit push origin Antoine_ROIs_PR_3 -git push origin Antoine_ROIs_PR_3 -git push origin Antoine_ROIs_PR_3 + orig_tracking_dir=${out_dir}/${nsub}/orig_space/tracking_second_order mni_tracking_dir_first_order=${out_dir}/${nsub}/mni_space/tracking_first_order mni_tracking_dir_second_order=${out_dir}/${nsub}/mni_space/tracking_second_order @@ -130,9 +128,8 @@ git push origin Antoine_ROIs_PR_3 scil_labels_combine ${orig_rois_dir}/${nsub}_left_thalamus_orig.nii.gz \ --volume_ids ${orig_rois_dir}/${nsub}_aparc.DKTatlas+aseg_orig.nii.gz ${Left_Thalamus[*]} --merge_groups -f -git push origin Antoine_ROIs_PR_3 -git push origin Antoine_ROIs_PR_3 -git push origin Antoine_ROIs_PR_3 + + scil_labels_combine ${mni_rois_dir}/${nsub}_left_thalamus_mni.nii.gz \ --volume_ids ${mni_rois_dir}/${nsub}_aparc.DKTatlas+aseg_mni.nii.gz ${Left_Thalamus[*]} --merge_groups -f @@ -147,7 +144,7 @@ git push origin Antoine_ROIs_PR_3 ${orig_rois_dir}/${nsub}_${nside}_spinal_density_second_order_seed_orig.nii.gz \ ${orig_rois_dir}/${nsub}_wm_mask_${fa_threshold}_orig.nii.gz \ ${orig_tracking_dir}/orig/${nsub}_${nside}_from_spinal_track_npv1000.trk \ - --npv ${npv_from_spinal_track_long} \--bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ + --npv ${npv_from_spinal_track_long} \ -v -f ${gpu} # Tracking from Spinal bundle - npv 100 @@ -167,8 +164,7 @@ git push origin Antoine_ROIs_PR_3 ${orig_rois_dir}/${nsub}_${nside}_thalamus_orig.nii.gz \ ${orig_rois_dir}/${nsub}_wm_mask_${fa_threshold}_orig.nii.gz\ ${orig_tracking_dir}/orig/${nsub}_${nside}_from_thalamus_npv500.trk \ - --npv ${npv_from_thalamus_track} \git push origin Antoine_ROIs_PR_3 -git push origin Antoine_ROIs_PR_3 + --npv ${npv_from_thalamus_track} \ -v -f ${gpu} done @@ -258,7 +254,7 @@ git push origin Antoine_ROIs_PR_3 ${out_dir}/mni_space/tracking_first_order/final/all_${nside}_remaining_cp_density_mni.nii.gz \ ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_mni.nii.gz \ --data_type uint8 -f - scil_labels_from_mask ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_mni.nii.gz \--bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ + scil_labels_from_mask ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_mni.nii.gz \ ${mni_rois_dir}/${nsub}_${nside}_second_order_VTTT_Controlat_vPSN_Cuts_labels_mni.nii.gz \ -f done From ea7e7ba44acc9566cbb776486305f85f2723d437 Mon Sep 17 00:00:00 2001 From: Antoine Lachance Date: Mon, 16 Feb 2026 21:40:10 -0500 Subject: [PATCH 07/11] Fix: remove leading spaces from new_ROIs filenames --- .../from_right/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo | 9 --------- .../from_right/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo | 9 --------- .../new_ROIs/VTTT_Controlat_OSandIS_1.bdo} | 0 .../new_ROIs/VTTT_Controlat_OSandIS_2.bdo} | 0 4 files changed, 18 deletions(-) delete mode 100644 ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo delete mode 100644 ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo rename ROIs_clean/MNI/{from_left/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo => from_right/new_ROIs/VTTT_Controlat_OSandIS_1.bdo} (100%) rename ROIs_clean/MNI/{from_left/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo => from_right/new_ROIs/VTTT_Controlat_OSandIS_2.bdo} (100%) diff --git a/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo deleted file mode 100644 index 0e6b5c7..0000000 --- a/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo +++ /dev/null @@ -1,9 +0,0 @@ - - - - - - - - - diff --git a/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo deleted file mode 100644 index 7671fe2..0000000 --- a/ROIs_clean/MNI/from_right/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo +++ /dev/null @@ -1,9 +0,0 @@ - - - - - - - - - diff --git a/ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_right/new_ROIs/VTTT_Controlat_OSandIS_1.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_1.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/VTTT_Controlat_OSandIS_1.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo b/ROIs_clean/MNI/from_right/new_ROIs/VTTT_Controlat_OSandIS_2.bdo similarity index 100% rename from ROIs_clean/MNI/from_left/new_ROIs/ VTTT_Controlat_OSandIS_2.bdo rename to ROIs_clean/MNI/from_right/new_ROIs/VTTT_Controlat_OSandIS_2.bdo From ae43ac1c3748d6e2730fdda66f7d72be5d9a2ceb Mon Sep 17 00:00:00 2001 From: laca6352 Date: Tue, 17 Feb 2026 20:56:36 -0500 Subject: [PATCH 08/11] reparer mon changement de nom --- .../MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_1.bdo | 9 +++++++++ 1 file changed, 9 insertions(+) create mode 100644 ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_1.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_1.bdo new file mode 100644 index 0000000..bbc7149 --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_1.bdo @@ -0,0 +1,9 @@ + + + + + + + + + From aca333600fc548ba33b6d8f018818cf2b1435aad Mon Sep 17 00:00:00 2001 From: alachancesc Date: Tue, 17 Feb 2026 21:06:55 -0500 Subject: [PATCH 09/11] Delete ROIs_clean/MNI/from_left/VTTT_Controlat_OSandIS_1.bdo --- ROIs_clean/MNI/from_left/VTTT_Controlat_OSandIS_1.bdo | 9 --------- 1 file changed, 9 deletions(-) delete mode 100644 ROIs_clean/MNI/from_left/VTTT_Controlat_OSandIS_1.bdo diff --git a/ROIs_clean/MNI/from_left/VTTT_Controlat_OSandIS_1.bdo b/ROIs_clean/MNI/from_left/VTTT_Controlat_OSandIS_1.bdo deleted file mode 100644 index bbc7149..0000000 --- a/ROIs_clean/MNI/from_left/VTTT_Controlat_OSandIS_1.bdo +++ /dev/null @@ -1,9 +0,0 @@ - - - - - - - - - From 1bab723a8365b522b4785eeed43afc733c36b331 Mon Sep 17 00:00:00 2001 From: laca6352 Date: Tue, 17 Feb 2026 21:08:25 -0500 Subject: [PATCH 10/11] deuxieme ROI manquante --- .../MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_2.bdo | 9 +++++++++ 1 file changed, 9 insertions(+) create mode 100644 ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_2.bdo diff --git a/ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_2.bdo b/ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_2.bdo new file mode 100644 index 0000000..6becd1f --- /dev/null +++ b/ROIs_clean/MNI/from_left/new_ROIs/VTTT_Controlat_OSandIS_2.bdo @@ -0,0 +1,9 @@ + + + + + + + + + From bc6993522eca0c150fc666ae0c2e482e23af5c78 Mon Sep 17 00:00:00 2001 From: alachancesc Date: Tue, 17 Feb 2026 22:17:12 -0500 Subject: [PATCH 11/11] Enlever les espaces qui faussaient la syntaxe avant les bdo --- trigeminal_second_order.sh | 49 +++++++++++++++++++++----------------- 1 file changed, 27 insertions(+), 22 deletions(-) diff --git a/trigeminal_second_order.sh b/trigeminal_second_order.sh index a18cd4b..49fe685 100755 --- a/trigeminal_second_order.sh +++ b/trigeminal_second_order.sh @@ -286,8 +286,9 @@ do --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_EXC_Pons_Ipsilat.nii.gz 'any' 'exclude' \ --drawn_roi ${mni_dir}/MNI/cs_plaque.nii.gz 'any' 'exclude'\ --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_INC_VTT_Area.nii.gz 'any' 'include'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/VTTT_Controlat_OSandIS_1.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/VTTT_Controlat_OSandIS_2.bdo 'any' 'exclude' -f + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/VTTT_Controlat_OSandIS_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/VTTT_Controlat_OSandIS_2.bdo 'any' 'exclude'\ + -f ## vPSN @@ -302,12 +303,13 @@ do --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_EXC_Ventral_Brainstem.nii.gz 'any' 'exclude' \ --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_EXC_CaudalMedulla_Controlat.nii.gz 'any' 'exclude' \ --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_INC_VTT_Area.nii.gz 'any' 'include'\ - --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_1.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_2.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_3.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_2.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_3.bdo 'any' 'exclude'\ --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_4.bdo 'any' 'exclude'\ --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_5.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_6.bdo 'any' 'exclude' -f + --bdo ${mni_dir}/MNI/from_${nside}/VTTT_Controlat/VTTT_Controlat_vPSN_6.bdo 'any' 'exclude'\ + -f @@ -321,10 +323,11 @@ do --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/DTTT_Controlat_INC_CaudalMedulla_Ipsilat.nii.gz 'any' 'include' \ --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/DTTT_Controlat_INC_Medulla_Controlat.nii.gz 'any' 'include' \ --drawn_roi ${mni_dir}/MNI/from_${contra_nside}/DTTT_Controlat_EXC_Midbrain_Ipsilat.nii.gz 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_1.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_2.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_3.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_4.bdo 'any' 'exclude' -f + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_2.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_3.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Controlat_4.bdo 'any' 'exclude'\ + -f echo "|------------- 3.3) ${nside} - DTTT (ipsilateral) - dPSN and CS -------------|" ## CS @@ -335,10 +338,11 @@ do --drawn_roi ${mni_rois_dir}/${nsub}_${nside}_spinal_density_second_order_seed_mni.nii.gz 'either_end' 'include' \ --drawn_roi ${mni_rois_dir}/${nsub}_${nside}_VPM_mni.nii.gz 'any' 'include' \ --drawn_roi ${mni_dir}/MNI/from_${nside}/VTTT_Controlat_EXC_Ventral_Brainstem.nii.gz 'any' 'exclude' \ - --drawn_roi ${mni_dir}/MNI/midsagittal_plane.nii.gz 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_1.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_2.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_3.bdo 'any' 'exclude' -f + --drawn_roi ${mni_dir}/MNI/midsagittal_plane.nii.gz 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_2.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_CS_3.bdo 'any' 'exclude'\ + -f ## dPSN ## VPM/Thalamus @@ -347,14 +351,15 @@ do ${mni_tracking_dir_second_order}/filtered/${nsub}_from_${nside}_DTTT_Ipsilat_dPSN.trk \ --drawn_roi ${mni_rois_dir}/${nsub}_${nside}_VPM_mni.nii.gz 'any' 'include' \ --drawn_roi ${out_dir}/mni_space/tracking_first_order/final/all_${nside}_remaining_cp_density_mni.nii.gz 'either_end' 'include'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_2.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_3.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_4.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_5.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_6.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_7.bdo 'any' 'exclude'\ - --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_8.bdo 'any' 'exclude' -f + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_1.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_2.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_3.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_4.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_5.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_6.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_7.bdo 'any' 'exclude'\ + --bdo ${mni_dir}/MNI/from_${nside}/new_ROIs/DTTT_Ipsilat_dPSN_8.bdo 'any' 'exclude'\ + -f done