Merge pull request #68 from cokelaer/main

Fix ci and html

Author: cokelaer

.github/workflows/main.yml

@@ -5,11 +5,11 @@ on:
     branches:
       - main
       - dev
-  workflow_dispatch:      
+  workflow_dispatch:
   pull_request:
     branches-ignore: []
   schedule:
-    - cron: '0 0 1 * *'
+    - cron: '0 0 2 * *'
 
 jobs:
   build-linux:
@@ -31,10 +31,10 @@ jobs:
       uses: actions/checkout@v2
 
     - name: conda/mamba
-      uses: mamba-org/provision-with-micromamba@main
+      uses: mamba-org/setup-micromamba@v1
       with:
           environment-file: environment.yml
-          extra-specs: |
+          create-args: >-
             python=${{ matrix.python }}
 
 

.github/workflows/pypi.yml

@@ -11,10 +11,10 @@ jobs:
     runs-on: ubuntu-20.04
     steps:
     - uses: actions/checkout@main
-    - name: Set up Python 3.8
+    - name: Set up Python 3.11
       uses: actions/setup-python@v2
       with:
-        python-version: 3.8
+        python-version: 3.11
 
     - name: Install package 
       run: |

sequana_pipelines/lora/src/templates/lora.html

@@ -158,7 +158,7 @@ <h2 class="font-medium mb-2 text-xl">Blast results for {{contig}}</h2>
     </div>
     <footer class="flex justify-center flex-initial px-2 pb-10 pt-4 bg-gray-50">
         <p>
-          <strong>LORA</strong> by <a class="text-indigo-500 active:text-indigo-600"href="https://sequana.readthedocs.io/en/master/">Sequana Team</a>. The source code is licensed
+          <strong>LORA</strong> by <a class="text-indigo-500 active:text-indigo-600"href="https://sequana.readthedocs.io/en/main/">Sequana Team</a>. The source code is licensed
           <a class="text-indigo-500 active:text-indigo-600" href="https://opensource.org/licenses/BSD-3-Clause">BSD3</a>.
         </p>
     </footer>

sequana_pipelines/lora/src/templates/summary.html

@@ -86,7 +86,7 @@ <h1 class="text-3xl font-semibold">Dependencies</h2>
     </div>
   <footer class="flex justify-center flex-initial px-2 pb-10 pt-4 bg-gray-50">
       <p>
-        <strong>LORA</strong> by <a class="text-indigo-500 active:text-indigo-600" href="https://sequana.readthedocs.io/en/master/">Sequana Team</a>. The source code is licensed
+        <strong>LORA</strong> by <a class="text-indigo-500 active:text-indigo-600" href="https://sequana.readthedocs.io/en/main/">Sequana Team</a>. The source code is licensed
         <a class="text-indigo-500 active:text-indigo-600" href="https://opensource.org/licenses/BSD-3-Clause">BSD3</a>.
       </p>
   </footer>