cosmetic fixes

sigven · Feb 17, 2025 · 783a5e3 · 783a5e3
1 parent 143b0ee
commit 783a5e3
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/pcgr/maf.py b/pcgr/maf.py
@@ -20,7 +20,7 @@ def update_maf(maf_tmp_fname: str,
     Args:
         maf_tmp_fname (str): File name of the temporary MAF file.
         maf_fname (str): File name of the final MAF file.
-        allelic_support_tags (dict): Dictionary of allelic support tags.
+        allelic_support_tags (dict): Dictionary of allelic support tags (encoded in VCF INFO field and retained in MAF).
         logger: Logger object for logging messages.
         update_allelic_support (bool): Flag indicating whether to update allelic support.
     Returns:
@@ -38,7 +38,6 @@ def update_maf(maf_tmp_fname: str,
     raw_maf_data = pd.read_csv(maf_tmp_fname, sep="\t", header=1, dtype='string',na_values=['.'], low_memory=False)
     if update_allelic_support is False:
         # write to file
-        b = 1
         os.rename(maf_tmp_fname, maf_fname)
     else:
 

diff --git a/pcgrr/pcgrr.Rproj b/pcgrr/pcgrr.Rproj
@@ -1,4 +1,5 @@
 Version: 1.0
+ProjectId: 54b09f5c-7bcb-48f9-ad45-4e1cfc6104da
 
 RestoreWorkspace: Default
 SaveWorkspace: Default