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I have bam files aligned to the transcriptome. I used the per-base base depth function on those bam files. I am getting the following error.
thread '' panicked at 'Fetched reference sequence: Unknown sequence name: NM_001011874.', src/commands/base_depth.rs:275:30
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace
The text was updated successfully, but these errors were encountered:
mohamedbahru
changed the title
For bam files aligned to transcriptome, it only outputs for certain number of transcripts (eg. 5548 transcripts)?
For bam files aligned to transcriptome, I am getting the error 'Unknown sequence name'?
Sep 10, 2024
Hi,
I have bam files aligned to the transcriptome. I used the per-base base depth function on those bam files. I am getting the following error.
thread '' panicked at 'Fetched reference sequence: Unknown sequence name: NM_001011874.', src/commands/base_depth.rs:275:30
note: run with
RUST_BACKTRACE=1
environment variable to display a backtraceThe text was updated successfully, but these errors were encountered: