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For bam files aligned to transcriptome, I am getting the error 'Unknown sequence name'? #75

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mohamedbahru opened this issue Sep 10, 2024 · 0 comments

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@mohamedbahru
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mohamedbahru commented Sep 10, 2024

Hi,

I have bam files aligned to the transcriptome. I used the per-base base depth function on those bam files. I am getting the following error.

thread '' panicked at 'Fetched reference sequence: Unknown sequence name: NM_001011874.', src/commands/base_depth.rs:275:30
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

@mohamedbahru mohamedbahru changed the title For bam files aligned to transcriptome, it only outputs for certain number of transcripts (eg. 5548 transcripts)? For bam files aligned to transcriptome, I am getting the error 'Unknown sequence name'? Sep 10, 2024
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