feat: add pre-commit

.github/setup/action.yml

@@ -23,6 +23,12 @@ runs:
         path: ~/.cache/pip
         key: ${{ runner.os }}-pip-${{ inputs.pip-cache-hash }}
         restore-keys: ${{ runner.os }}-pip-
+    - name: Set up pre-commit cache
+      uses: actions/cache@v2
+      with:
+        path: ~/.cache/pre-commit
+        key: ${{ runner.os }}-pre-commit-${{ hashFiles('.pre-commit-config.yaml' )}}
+        restore-keys: ${{ runner.os }}-pre-commit-
     - name: Set up Conda with Python ${{ inputs.python-version }}
       uses: conda-incubator/setup-miniconda@v2
       with:

.isort.cfg

@@ -0,0 +1,2 @@
+[settings]
+profile = black

.pre-commit-config.yaml

@@ -0,0 +1,42 @@
+# Configuration file for pre-commit (https://pre-commit.com/).
+# Please run `pre-commit run --all-files` when adding or changing entries.
+
+repos:
+  - repo: https://github.com/psf/black
+    rev: 22.3.0
+    hooks:
+      - id: black
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.1.0
+    hooks:
+      - id: codespell
+        args: [--ignore-words=.codespellignore]
+        types_or: [jupyter, markdown, python, shell]
+  - repo: https://github.com/PyCQA/doc8
+    rev: 0.11.1
+    hooks:
+      - id: doc8
+  - repo: https://github.com/PyCQA/flake8
+    rev: 4.0.1
+    hooks:
+      - id: flake8
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v0.942
+    hooks:
+      - id: mypy
+        # TODO lint test and scripts too
+        files: "^src/.*\\.py$"
+        args:
+          - --ignore-missing-imports
+          - --explicit-package-bases
+        additional_dependencies:
+          - click != 8.1.0
+          - numpy
+          - pyproj
+          - pystac
+          - types-requests
+  - repo: https://github.com/pycqa/isort
+    rev: 5.10.1
+    hooks:
+      - id: isort
+        name: isort (python)

docker/Dockerfile

@@ -31,6 +31,7 @@ RUN conda install -c conda-forge pandoc && conda clean -af
 COPY requirements-dev.txt ./
 RUN pip install -r requirements-dev.txt
 COPY . ./
+RUN git init
 RUN pip install -e .[all]
 
 

requirements-dev.txt

@@ -8,6 +8,7 @@ lxml-stubs
 mypy
 nbsphinx
 packaging
+pre-commit
 pylint
 pytest
 pytest-cov

scripts/format

@@ -13,13 +13,11 @@ Format code with black
 "
 }
 
-DIRS_TO_CHECK=("src" "tests")
-
 if [ "${BASH_SOURCE[0]}" = "${0}" ]; then
     if [ "${1:-}" = "--help" ]; then
         usage
     else
         # Code formatting
-        black ${DIRS_TO_CHECK[@]}
+        pre-commit run black --all-files
     fi
 fi

scripts/lint

@@ -19,11 +19,6 @@ if [ "${BASH_SOURCE[0]}" = "${0}" ]; then
     if [ "${1:-}" = "--help" ]; then
         usage
     else
-        # Code formatting
-        scripts/format
-        # Lint
-        flake8 ${DIRS_TO_CHECK[@]}
-        # Type checking
-        mypy --install-types --non-interactive src
+        pre-commit run --all-files
     fi
 fi