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Version of scArches #6

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Cicilalal opened this issue Mar 5, 2022 · 4 comments
Open

Version of scArches #6

Cicilalal opened this issue Mar 5, 2022 · 4 comments

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@Cicilalal
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Hi, if I want to reproduce the results in notebooks/data_analysis/pancreas.ipynb, which version of 'scArches' should I install?
Thank you in advance!
@M0hammadL
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Hi, please use the most updated version, we moved from TF version to PyTorch now.

https://scarches.readthedocs.io/en/latest

@Cicilalal
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It seems that the most updated version does not have CVAE (MSE) or CVAE (NB) used in ‘Mapping single-cell data to reference atlases by transfer learning’.

@M0hammadL
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it has it is just under trVAE.

@Cicilalal
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Oh, I see. Thank you very much!

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@M0hammadL @Cicilalal