Skip to content

Suggestion for predicting completeness of amino-acid biosynthetic pathways #8

@Anto007

Description

@Anto007

I think it will be useful if the Protologger overview can inform users about the completeness of amino-acid biosynthetic pathways in their input organism (like what GapMind tool already does at https://papers.genomics.lbl.gov/cgi-bin/gapView.cgi). Users can for example analyze their MAGs/SAGs on Protologger and based on the absence of genes for the synthesis of specific amino-acids, they can perform targeted cultivation-based approaches (as in better design of cultivation media with the missing amino-acids extraneously added) for any of their potentially auxotrophic (as-yet-uncultivated) organisms. Besides, I think it is still informative to see a sentence in the protologue commenting about the organism's ability to synthesize all amino-acids or the lack thereof.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions