Fix documentation consistency issues

Co-authored-by: stemangiola <[email protected]>

Author: Copilot

R/tidySingleCellExperiment-package.R

@@ -25,7 +25,7 @@
 #'   \item Direct plotting with \code{\link[ggplot2]{ggplot}} and \code{\link[plotly]{plot_ly}}
 #'   \item \code{\link{aggregate_cells}} - Aggregate cell gene-transcription abundance as pseudobulk tissue
 #'   \item \code{\link{as_tibble}} - Convert cell-wise information to a tibble
-#'   \item \code{join_features} - Add feature-wise information, returns a tidySingleCellExperiment object
+#'   \item \code{\link{join_features}} - Add feature-wise information, returns a tidySingleCellExperiment object
 #' }
 #'
 #' For detailed information on usage, see the package vignette, by typing
@@ -55,8 +55,8 @@
 #' \itemize{
 #'   \item \code{\link[SingleCellExperiment]{SingleCellExperiment}} - The core Bioconductor single-cell data structure
 #'   \item \code{\link[tidySummarizedExperiment]{tidySummarizedExperiment}} - For tidy manipulation of SummarizedExperiment objects
-#'   \item \code{tidyseurat} - For tidy manipulation of Seurat objects
-#'   \item \code{tidybulk} - For tidy bulk RNA-seq data analysis
+#'   \item tidyseurat - For tidy manipulation of Seurat objects
+#'   \item tidybulk - For tidy bulk RNA-seq data analysis
 #' }
 #'
 #' @author Stefano Mangiola \email{mangiolastefano@@gmail.com}