Release v0.2.15 (#14)

* update doc

*  bump  gpgr version

Author: qclayssen

CHANGELOG.md

@@ -2,6 +2,8 @@
 
 ## dev
 
+- [14](https://github.com/umccr/bolt/pull/14) - gpgr version bump to 2.2.0
+
 - [3](https://github.com/scwatts/bolt/pull/3) - Improve PCGR / CPSR argument handling
 
 - [6](https://github.com/umccr/bolt/pull/6) - Change oncoanalyser v2.0.0 uptade, with switch sv caller from GRIPSS to eSVee

README.md

@@ -54,20 +54,20 @@ the software environment and dependencies. Consequently, dependencies are split
 
 | Name    | Docker image URI                    | Commands                       |
 | ---     | ---                                 | ---                            |
-| pcgr    | ghcr.io/scwatts/bolt:0.2.14-pcgr    | • `bolt smlv_germline report`<br />• `bolt smlv_somatic annotate`<br />• `bolt smlv_somatic report`<br /> |
-| gpgr    | ghcr.io/scwatts/bolt:0.2.14-gpgr    | • `bolt other cancer_report`   |
-| snpeff  | ghcr.io/scwatts/bolt:0.2.14-snpeff  | • `bolt sv_somatic annotate`   |
-| circos  | ghcr.io/scwatts/bolt:0.2.14-circos  | • `bolt other purple_baf_plot` |
-| multiqc | ghcr.io/scwatts/bolt:0.2.14-multiqc | • `bolt other multiqc_report`  |
-| base    | ghcr.io/scwatts/bolt:0.2.14         | • `bolt smlv_germline prepare`<br />• `bolt smlv_somatic rescue`<br />• `bolt smlv_somatic filter`<br />• `bolt sv_somatic prioritise`<br /> |
+| pcgr    | ghcr.io/scwatts/bolt:0.2.15-pcgr    | • `bolt smlv_germline report`<br />• `bolt smlv_somatic annotate`<br />• `bolt smlv_somatic report`<br /> |
+| gpgr    | ghcr.io/scwatts/bolt:0.2.15-gpgr    | • `bolt other cancer_report`   |
+| snpeff  | ghcr.io/scwatts/bolt:0.2.15-snpeff  | • `bolt sv_somatic annotate`   |
+| circos  | ghcr.io/scwatts/bolt:0.2.15-circos  | • `bolt other purple_baf_plot` |
+| multiqc | ghcr.io/scwatts/bolt:0.2.15-multiqc | • `bolt other multiqc_report`  |
+| base    | ghcr.io/scwatts/bolt:0.2.15         | • `bolt smlv_germline prepare`<br />• `bolt smlv_somatic rescue`<br />• `bolt smlv_somatic filter`<br />• `bolt sv_somatic prioritise`<br /> |
 
 ## Usage
 
 Given the nature of software dependencies required, it is strongly recommended to run `bolt` commands via the existing
 [Docker images](#docker-images):
 
 ```bash
-docker run -ti -v $(pwd):$(pwd) -w $(pwd) ghcr.io/scwatts/bolt:0.2.14 \
+docker run -ti -v $(pwd):$(pwd) -w $(pwd) ghcr.io/scwatts/bolt:0.2.15 \
   bolt smlv_somatic filter \
     --tumor_name tumor_sample \
     --vcf_fp tumor_sample.vcf.gz \

pyproject.toml

@@ -8,7 +8,7 @@ include = ["bolt*"]
 
 [project]
 name = "bolt"
-version = "0.2.14"
+version = "0.2.15"
 authors = [
   {name = "Stephen Watts", email = "[email protected]"},
 ]