Failed to install 'microbiomeSeq' from GitHub: lazy-load database

[betsyalf]

Downloading GitHub repo umerijaz/microbiomeSeq@master
Skipping 6 packages not available: DESeq2, phyloseq, impute, preprocessCore, GO.db, AnnotationDbi
Installing 4 packages: WGCNA, impute, preprocessCore, GO.db
packages ‘impute’, ‘preprocessCore’, ‘GO.db’ are not available (for R version 3.6.1)dependencies ‘impute’, ‘preprocessCore’, ‘GO.db’ are not availablePackage which is only available in source form, and may need compilation of
C/C++/Fortran: ‘WGCNA’
Error: Failed to install 'microbiomeSeq' from GitHub: lazy-load database '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/callr/R/callr.rdb' is corrupt

[wlwhalley]

This reply might come a little late to you but for anyone else who comes across this -

This error appears to be a dependencies issue after updating to a new version of R. I installed the dependencies manually e.g

if (!requireNamespace("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
BiocManager::install("DESeq2")
BiocManager::install("impute")
BiocManager::install("preprocessCore")
BiocManager::install("GO.db")
BiocManager::install("adespatial")

There are some packages in that snippet of code that weren't mentioned in OPs post, I presumed they already had them but I didn't.

[tonyjhlam]

This reply might come a little late to you but for anyone else who comes across this -

This error appears to be a dependencies issue after updating to a new version of R. I installed the dependencies manually e.g

if (!requireNamespace("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
BiocManager::install("DESeq2")
BiocManager::install("impute")
BiocManager::install("preprocessCore")
BiocManager::install("GO.db")
BiocManager::install("adespatial")

There are some packages in that snippet of code that weren't mentioned in OPs post, I presumed they already had them but I didn't.

Superpowers come in different shapes and sizes. Thanks for this.