New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Co-occurence network with a varstab transformed phyloseq object #51

Open

carloshenriquezc opened this issue Nov 19, 2020 · 0 comments

carloshenriquezc commented Nov 19, 2020

Hi all,
Thanks for all the codes,
I wonder if its possible to use the varstab transformed phyloseq object in the co_occurence_network function

I modified comm.data<-vegan::rrarefy(abund_table,min(rowSums(abund_table)))
to
comm.data<-abund_table
within the co_occurence_network.R

However, I receive this message:
Error in comm_stats(corr_results$results, rhos) : unused argument (rhos)

Hope you can give me a hand on this

Regards!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment