Merge pull request #578 from guyer/inline

Add --inline to travis tests

Author: guyer

.travis.yml

@@ -7,6 +7,7 @@ os:
    - linux
 env:
   - TRAVIS_PYTHON_VERSION=2.7 MPIRUN= FIPY_SOLVERS=pysparse
+  - TRAVIS_PYTHON_VERSION=2.7 MPIRUN= FIPY_SOLVERS=pysparse FIPY_INLINE=1
   - TRAVIS_PYTHON_VERSION=2.7 MPIRUN= FIPY_SOLVERS=scipy
   - TRAVIS_PYTHON_VERSION=2.7 MPIRUN= FIPY_SOLVERS=trilinos
   - TRAVIS_PYTHON_VERSION=2.7 MPIRUN="mpirun -np 2" FIPY_SOLVERS=trilinos
@@ -56,10 +57,10 @@ before_install:
       if [[ $PY3K -eq 1 ]]; then
         conda create --quiet --name test-environment --show-channel-urls --channel guyer --channel conda-forge python=$TRAVIS_PYTHON_VERSION numpy scipy gmsh matplotlib;
       else
-        conda create --quiet --name test-environment --show-channel-urls --channel guyer --channel conda-forge python=$TRAVIS_PYTHON_VERSION numpy scipy gmsh pysparse mpi4py matplotlib mayavi fipytrilinos;
+        conda create --quiet --name test-environment --show-channel-urls --channel guyer --channel conda-forge python=$TRAVIS_PYTHON_VERSION numpy scipy gmsh pysparse mpi4py matplotlib mayavi fipytrilinos weave;
       fi
     elif [[ $TRAVIS_OS_NAME -eq "osx" ]]; then
-      conda create --quiet --name test-environment --show-channel-urls --channel guyer --channel conda-forge python=$TRAVIS_PYTHON_VERSION fipy;
+      conda create --quiet --name test-environment --show-channel-urls --channel guyer --channel conda-forge python=$TRAVIS_PYTHON_VERSION fipy weave;
     fi
   - source activate test-environment
   # Useful for debugging any issues with conda
@@ -81,6 +82,9 @@ before_script:
       sleep 3;
     fi
 script:
- $MPIRUN python setup.py test ;
- # ls -l /usr/lib/liblapack*;
- # dpkg -l "liblapack*";
+ # inline must be run twice to clear out compiler warnings
+ # we don't care if it fails the first time
+ - if [[ ! -z "${FIPY_INLINE}" ]]; then
+     $MPIRUN python setup.py test > /dev/null 2>&1 || true;
+   fi
+ - $MPIRUN python setup.py test;

fipy/meshes/cylindricalNonUniformGrid2D.py

@@ -73,7 +73,7 @@ def __init__(self, dx=1., dy=1., nx=None, ny=None,
         super(CylindricalNonUniformGrid2D, self).__init__(dx=dx, dy=dy, nx=nx, ny=ny, overlap=overlap,
                         communicator=communicator, *args, **kwargs)
 
-        self._faceAreas *= self.faceCenters[0]
+        self._faceAreas *= self.faceCenters[0].value
 
         self._scaledFaceAreas = self._scale['area'] * self._faceAreas
         self._areaProjections = self.faceNormals * self._faceAreas

fipy/tools/numerix.py

@@ -447,13 +447,14 @@ def sqrtDot(a1, a2):
 
         Usually used with v1==v2 to return magnitude of v1.
         """
-        unit1 = unit2 = 1
+        from fipy.tools.dimensions import physicalField
+        unit1 = unit2 = physicalField._unity
 
         def dimensionlessUnmasked(a):
-            unit = 1
+            unit = physicalField._unity
             mask = False
             if _isPhysical(a):
-                unit = a.inBaseUnits().getUnit()
+                unit = a.inBaseUnits().unit
                 a = a.numericValue
             if MA.isMaskedArray(a):
                 mask = a.mask
@@ -481,7 +482,7 @@ def dimensionlessUnmasked(a):
         if NUMERIX.any(mask1) or NUMERIX.any(mask2):
             result1 = MA.array(result1, mask=NUMERIX.logical_or(mask1, mask2))
 
-        if unit1 != 1 or unit2 != 1:
+        if unit1 != physicalField._unity or unit2 != physicalField._unity:
             from fipy.tools.dimensions.physicalField import PhysicalField
             result1 = PhysicalField(value=result, unit=(unit1 * unit2)**0.5)